Hello,
I just tried running the new version of ARP/wARP (Classic) and got the following error message:
:1: parser error : Document is empty
XMLOutputFilename = 'snow_log.xml'
^
snow - WRNG* : CConfig::processStream File isn't in proper XML format
Any ideas on how to fix this so that ARP/wARP will successfully run?
Thanks,
-Tracy
====================================
Tracy Arakaki, Ph.D.
University of Washington
Dept. of Biochemistry
MS 357742
Seattle, WA 98195-7742
====================================
On Mon, 16 Jul 2007, Victor Lamzin wrote:
> Dear all,
>
> We are happy to announce the release of ARP/wARP version 7.0
>
> Please visit http://www.arp-warp.org for details and software download.
>
> The major improvements are:
>
> • A new module for ultra-fast low resolution tracing of helical and
> beta-stranded fragments at resolution down to 4.5 A.
> • Improved and faster chain tracing, working at lower resolution than before,
> for both 'Classic' and 'flex-wARP' modules.
> • Flex-wARP, a control system which automatically defines the sequence of the
> steps to be taken during iterative model building.
> • Considerably advanced automated ligand building with ~80% success in site
> identification and ~70% in ligand constructions.
> • An option for ‘cocktail screening’; the most likely ligand is
> identified and built from a list of potential compounds.
> • Improved fragment sequence docking with empirical targets extracted from
> experimental datasets.
> • A validation program ElAl (originated from G. Kleywegt) based on
> statistical density targets from the EDS implemented in flex-wARP.
> • A standalone module for side chain building and refinement.
> • A module for building loops between fragments implemented in flex-wARP and
> provided standalone.
> • The solvent building module with incremental improvements as a dedicated
> module.
> • Remote job submission at the EMBL Hamburg cluster directly from the web in
> addition to the CCP4i GUI.
> • Command-line job submission for most ARP/wARP tasks.
> • ARP/wARP is now running on Mac powerpc, Mac Intel, some flavours of Linuxes
> (i32 and 64-bit ) as well as alpha-Tru64 and mips-IRIX64.
>
> Victor and Tassos on behalf of the ARP/wARP developers' team.
>
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