Instructions for reading CCP4-format maps into pymol can be found in the
pymol wiki. Point your browser to
http://www.pymolwiki.org/index.php/Display_CCP4_Maps.
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Roger S. Rowlett
Professor
Colgate University Presidential Scholar
Department of Chemistry
Colgate University
13 Oak Drive
Hamilton, NY 13346
tel: (315)-228-7245
ofc: (315)-228-7395
fax: (315)-228-7935
email: [log in to unmask]
U Sam wrote:
> Hi,
> I like to short out how I can see map in pymol and bobscript.
> When I am using pymol, I cann't see map file. Same map file I can see in Coot.
> Map file (created for O using from .fcf shelxpro) is also not coming; extenstion .xplor (or .dsn6) not working either.
>
> message:
> ........
> Crystal: Unit Cell Volume 845180.
> ExecutiveLoad: "popp_fcf_sigmaa1_FP1_map.ccp4" loaded as "popp_fcf_sigmaa1_FP1_map", through state 0.
>
> How one can label symbols in pymols.
> Example shown at "http://www.pymolwiki.org/index.php/Label" does not give symbolic label.
>
> In bobscript when I use map file (created using shelxpro for O format) as per the example shown in
> "http://www.strubi.ox.ac.uk/bobscript/example3.html" error message comes.
>
> message:
> .....
> contouring map shelx at 4.00
> Error: no graphical segments to output
> end_plot
> ^^^^^^^^
> line number 36
>
> Maximum actual usage of allocated memory:
> 60606 out of 1200000 "map" points used (leaving 4.3 Mb unused)
>
>
> Line number 36 is "end_plot". I am not sure why is this error for,
>
> Appreciate suggestion and help.
> Thanks
> Sam
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