Hi,
I just installed fsl (64bit) on a linux Suse machine and tried to evaluate
it with FEEDS. I usually work on windows systems so i don't really know
much about this system. I've got many errors and FEEDS doesn't finish
because of missing or corrupt files ?! The top command shows the following
memory state (if this is helpful):
top - 10:54:55 up 10 days, 1:54, 4 users, load average: 0.06, 0.28,
0.25
Tasks: 127 total, 2 running, 125 sleeping, 0 stopped, 0 zombie
Cpu(s): 0.3% us, 0.7% sy, 0.0% ni, 99.0% id, 0.0% wa, 0.0% hi, 0.0%
si
Mem: 2055404k total, 1946580k used, 108824k free, 26984k buffers
Swap: 6835616k total, 3500k used, 6832116k free, 1363904k cached
The exact output of FEEDS follows below. Any Ideas how to correct this
problem(s)? For our fmri analysis the melodic tool would be most
important.
Thanks in advance for your help.
Gabriel Ziegler
FSL Evaluation and Example Data Suite v3.3
start time = Mo Jul 16 10:51:27 CEST 2007
hostname = amd05
os = Linux amd05 2.6.13-15.15-default #1 Mon Feb 26 14:11:33 UTC 2007
x86_64 x86_64 x86_64 GNU/Linux
/bin/rm -rf /home/ziegler/feeds/feeds/results ;
mkdir /home/ziegler/feeds/feeds/results
Starting PRELUDE & FUGUE at Mo Jul 16 10:51:27 CEST 2007
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting SUSAN at Mo Jul 16 10:51:28 CEST 2007
% error = 0.0
Starting SIENAX (including testing BET and FLIRT and FAST) at Mo Jul 16
10:52:20 CEST 2007
checking error on BET:
% error = 0.0
checking error on FLIRT:
No output image created
Warning - test failed!
checking error on FAST:
checking error on single-image binary segmentation:
No output image created
Warning - test failed!
checking error on partial volume images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on SIENAX volume outputs:
% error = 46.36
Warning - test failed!
% error = 2.35
Warning - test failed!
% error = 58.57
Warning - test failed!
% error = 40.66
Warning - test failed!
% error = 99.23
Warning - test failed!
Starting BET2 at Mo Jul 16 10:52:33 CEST 2007
checking error on T1 brain extraction:
No output image created
Warning - test failed!
checking error on skull and scalp surfaces:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting FEAT at Mo Jul 16 10:52:34 CEST 2007
checking error on filtered functional data:
No output image created
Warning - test failed!
checking error on raw Z stat images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on thresholded Z stat images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on position of largest cluster of Talairached zfstat1:
couldn't open
"/home/ziegler/feeds/feeds/results/fmri.feat/cluster_zfstat1_std.txt": no
such file or directory
while executing
"open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
invoked from within
"if { $feeds(feat) } {
puts "\nStarting FEAT at [ exec date ]"
# fix FEAT setup file to use FEEDSDIR and FSLDIR
fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
(file "./RUN" line 285)
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