Moreover, if I look at my bvecs files, the ´good´datasets have similar
values, while in this one subject instead of xyz dimensions it looks I have
zyx. I dont know which way to flip it and whether bvecs are then also
adjusted automatically?
Thank you,
Aga
On 20.06.2007 17:03 Uhr, "Tim Behrens" <[log in to unmask]> wrote:
> Can you put a snapshot of the colour coding on the web, or send it in?
>
> Cheers
>
> T
> On 20 Jun 2007, at 14:58, Agnieszka Burzynska wrote:
>
>> Dear all,
>> After running DTIFit, when I overlay FA maps and V1 I see in all
>> subejcts
>> but one the correct color-coding of diffusion direction. It seems that
>> something happend already before data conversion. I treid
>> avwswapdim, but so
>> far was unscuccessful.
>>
>> Can anyone tell me how could this happen with just one scan and
>> what to do?
>>
>> Best wishes,
>> Aga
>>
>> On 20.06.2007 15:24 Uhr, "Steve Smith" <[log in to unmask]> wrote:
>>
>>> Hi,
>>>
>>> Sure - just type "cluster" to get the usage, and output the cluster
>>> size image for use in the thresholding. Then you can use avwmaths++
>>> and avwstats++ to get further stats using these masks.
>>>
>>> Cheers, Steve.
>>>
>>>
>>> On 19 Jun 2007, at 17:54, Ping-Hong Yeh wrote:
>>>
>>>> Dear FSLers,
>>>>
>>>> Is there a way to use cluster command on randomise t-maps for
>>>> thresholding
>>>> the minimum cluster size, and then output the mean and standard
>>>> deviation
>>>> of each subject and individual group for each cluster?
>>>>
>>>> Thanks.
>>>>
>>>> Ping-Hong Yeh
>>>
>>>
>>> ---------------------------------------------------------------------
>>> ---
>>> ---
>>> Stephen M. Smith, Professor of Biomedical Engineering
>>> Associate Director, Oxford University FMRIB Centre
>>>
>>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>>> +44 (0) 1865 222726 (fax 222717)
>>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>>> ---------------------------------------------------------------------
>>> ---
>>> ---
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