David Gutman wrote:
> It's likely FSL wasn't sourced properly--
>
> you can always cheat to make sure things work and at the command line
> just type
>
> export FSLDIR=/usr/share/fsl (or wherever you installed FSL)
>
> and to double check, just type "echo $FSLDIR" to make sure the
> environment variables is now set
>
> this may also help:
>
> . /usr/share/fsl/etc/fslconf/fsl.sh
> (don't forget the . )
>
>
>
>
> On 6/28/07, *Kevin Murnane* < [log in to unmask]
> <mailto:[log in to unmask]>> wrote:
>
> Sorry for the basic question but could someone give me some adivse
> on a
> Linux installation.
>
> I am running Windows XP and using VMWare to run Red Hat Enterprise
> Linux 4.
>
> I have unzipped and tarred the FSL download and updated .bashrc in
> my home
> directory. When I try to run FSL I get the following error
> message. Also, I
> am using BASH.
>
> FSLDIR has not been set!
> /usr/local/fsl/bin/wish: line 17: /bin/wish8.4: No such file or
> directory
> /usr/local/fsl/bin/wish: line 17: exec: /bin/wish8.4: cannot
> execute: No
> such file or directory
>
> Wish8.4 is not in /bin but in /usr/local/fsl/bin
>
> but I think the path is set right
>
> $ echo $path
> /usr/local/fsl/bin /usr/kerberos/bin /usr/local/bin /usr/bin /bin
> /usr/X11R6/bin
>
>
> My .bashrc looks like this
>
> # .bashrc
>
> # User specific aliases and functions
>
> # FSL Additions
> FSLDIR=/usr/local/fsl
> . ${FSLDIR}/etc/fslconf/fsl.sh
> PATH=${FSLDIR}/bin:${PATH}
> export FSLDIR PATH
>
>
>
> # Source global definitions
> if [ -f /etc/bashrc ]; then
> . /etc/bashrc
> fi
> ~
> ".bashrc" 16L, 242C written
>
>
> Any help would be much appreciated,
>
> Kevin
>
>
>
>
> --
> David A Gutman, M.D. Ph.D.
> Department of Psychiatry & Behavioral Sciences
> Emory University School of Medicine
Thanks,
everything worked once I restarted Linux. Kinda weird but I'll take it.
The info will be helpful if things stop working though.
I should have everything ready to transfer by tomorrow.
Kevin
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