Can you put a snapshot of the colour coding on the web, or send it in?
Cheers
T
On 20 Jun 2007, at 14:58, Agnieszka Burzynska wrote:
> Dear all,
> After running DTIFit, when I overlay FA maps and V1 I see in all
> subejcts
> but one the correct color-coding of diffusion direction. It seems that
> something happend already before data conversion. I treid
> avwswapdim, but so
> far was unscuccessful.
>
> Can anyone tell me how could this happen with just one scan and
> what to do?
>
> Best wishes,
> Aga
>
> On 20.06.2007 15:24 Uhr, "Steve Smith" <[log in to unmask]> wrote:
>
>> Hi,
>>
>> Sure - just type "cluster" to get the usage, and output the cluster
>> size image for use in the thresholding. Then you can use avwmaths++
>> and avwstats++ to get further stats using these masks.
>>
>> Cheers, Steve.
>>
>>
>> On 19 Jun 2007, at 17:54, Ping-Hong Yeh wrote:
>>
>>> Dear FSLers,
>>>
>>> Is there a way to use cluster command on randomise t-maps for
>>> thresholding
>>> the minimum cluster size, and then output the mean and standard
>>> deviation
>>> of each subject and individual group for each cluster?
>>>
>>> Thanks.
>>>
>>> Ping-Hong Yeh
>>
>>
>> ---------------------------------------------------------------------
>> ---
>> ---
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------
>> ---
>> ---
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