Hi Me,
On 21 May 2007, at 18:07, Me Atwork wrote:
> i am a just beginning to learn about fsl and running tbss so i have
> many questions.
>
> 1. after running tbss_1_preproc, i am unable to view the webpage
> produced from the command
> "slicesdir FAi/*.hdr" i copied the .html into the browser and it
> gives an error that the page can not be
> displayed. any thoughts?
This probably comes down to how you're "copying" the .html into the
browser - you'll need to ask your local sysadmin to show you how to
view local files on your browser.
> 2. i want to use a pre-specified target. do i pick the target
> based on the images displayed on the
> webpage?
That would be dangerous, unless you look very carefully to find a
"typical" image, which will be hard I suspect. If you want to do this
I would suggest starting with the example $FSLDIR/etc/standard/
example_FA_target rather than one of your own subjects.
> once it is picked, do i use the following command?
>
> export FSLOUTPUTTYPE=ANALYZE
> avwmaths_16SI $FSLDIR/etc/standard/example_FA_target FAi/target
> tbss_2_reg
>
Yes that should work.
Cheers.
>
>
> thanks for help in advance!
> i am sure to have more questions to come
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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