Hi Donna,
Could you find the varcope1 and run it as a movie loop in FSLView,
also try things like
avwmaths++ varcope1 -Tmean grot1
avwmaths++ varcope1 -Tstd grot2
and view the grots too.... does that show any problems with the
varcope file?
Cheers.
On 15 May 2007, at 16:49, Donna Lloyd wrote:
> Hi,
>
> I'm trying to run a higher-level Flame 1+2 analysis on some old
> data (fslerrorreport attached). All goes well until it gets to this
> point:
>
> /usr/local/fsl/bin/avwmaths varcope1 -mas mask varcope1
>
> and then it stops. There's no error message, I've checked the
> varcope images and they look OK to me and I've tried a few datasets
> and it stops at the same point on all of them!
>
> Hope you can see where the problem lies. Thanks as always for any
> help,
>
> Donna
>
> Dr. Donna Lloyd
> Lecturer in Psychology
> School of Psychological Sciences
> The University of Manchester
> Oxford Road
> Manchester M13 9PL
> U.K.
> Tel: +44 (0) 161 275 2573
> Fax: +44 (0) 161 275 2685/2588
>
> <fsl_p615lx.gz>
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Stephen M. Smith, Professor of Biomedical Engineering
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