Hi Yang Li
Are you sure it's not just a file permission problem? If the Apache
account does not have read access to /home/prog then even if you make a
local copy of ccp4.setup so Apache can read it, the script will report
that the directory /home/prog/ccp4/ does not exist. In fact if Apache
doesn't have read access (as you say) to $CINCL/ccp4.setup then
presumably it doesn't have read access to the other ccp4 files either,
in which case how is the Apache account supposed to run ccp4 programs?
HTH!
-- Ian
> -----Original Message-----
> From: [log in to unmask]
> [mailto:[log in to unmask]] On Behalf Of yang li
> Sent: 21 May 2007 10:23
> To: [log in to unmask]
> Subject: How to run ccp4 in php script?
>
> Hi All,
> I have some scripts which need to use some
> programs--like cad, refmac--in ccp4, and I want to
> use a php script to run these scripts, with command as :
> $cmd =" sh aa.inp"; system($cmd);
> As I know, when I use php script, the account is Apache,
> which is a nologin account, all the files I used
> are put in the directory which belong to Apache.I donnot know
> what shell it uses, assume it uses bash,
> since Apache has no permission to /ccp4/include/ccp4.setup, I
> copied ccp4.setup to the directory I used.
> And add a line in the script to source this ccp4.setup, file,
> but it gives such error information:
> ********************* WARNING ********************** The
> directory /home/prog/ccp4 (assigned to CCP4_MASTER) does not
> exist. The CCP4 programs will not run correctly, and any
> installation attempt will have errors or will fail.
> ********************* WARNING **********************
> I donnot know how to solve this problem. Anyone knows how
> to run the ccp4 programs with the php script?
>
> Thanks!
>
>
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