Hello All,
I apologize for being slow in this matter but I could not figure out a way to pass on the LIBIN parameter to REFMAC for refinemenet of the model with ligand.
Based on previous discussions I have figured out that COOT is not passing the CIF file I read to REFMAC and hence REFMAC complains about the new ligand in the model. I have been able to pass on the MAKE CHECK NONE argument via the scripting window. But the LIBIN should be passed on as an argument for REFMAC before itself.
Thanks
Balaji
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