Hi - according to your second email, your T1 is in transverse. In
this case, you should reorient the T1-weighted image.
You can do this with avwswapdim.
Cheers
T
On 17 Apr 2007, at 14:21, Gwenaëlle DOUAUD wrote:
> Hi,
>
> I guess from what you're saying that you want to
> reorient your DTI data in the axial plane. So you
> might want to use avwswapdim to change the
> orientation. Please note that it indicates you if, by
> doing some bad manipulations, you're actually flipping
> L/R your images...
>
> Hope this helps,
> Gwenaelle
>
> --- Zarinah Agnew <[log in to unmask]> a écrit :
>
>> Hi there,
>>
>> I am trying to register DTI data to T1 space,
>> however our T1 is
>> aquired in the axial plane. Does anyone know how to
>> rotate this to
>> enable FLIRT registration?
>>
>> Many thanks
>>
>> Zarinah
>>
>> Zarinah Agnew
>> Stem Cell Imaging
>> MRC Clinical Sciences Centre
>> Imperial College London
>> Hammersmith Hospital Campus
>> Du Cane Road
>> London
>> W12 0NN
>>
>> Tel. 0208 38 (33796)
>> [log in to unmask]
>>
>> www.csc.mrc.ac.uk
>>
>>
>>
>>
>>
>>
>>
>>
>
>
>
>
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