Ah, yes, sorry, it's just that some model variables only get set
properly when the GUI is used to setup new EVs etc - so it's possible
I think to increase the number of EVs (etc) without this properly
happening (eg by loading a partially complete design.fsf and not
opening the model GUI) - will try to get this sorted in the future
but for now hopefully you have what you need....
Cheers, Steve.
On 21 Apr 2007, at 14:57, Martin M Monti ([log in to unmask]) wrote:
> Steve,
>
> the script is now correctly produced!
> What exactly was the problem?
>
> m
>
> ----- Original Message -----
> From: Steve Smith <[log in to unmask]>
> Date: Saturday, April 21, 2007 3:08 am
> Subject: Re: [FSL] More FEAT script error (at .fsf writing)
> To: [log in to unmask]
>
>> Hmmm. What happens if you open the model specification sub-GUI,
>> display the model, press OK, then try to save?
>> If this doesn't fix it, please send me enough details to reproduce
>> the problem and we'll track it down.
>> Cheers, Steve.
>>
>>
>>
>> On 20 Apr 2007, at 23:11, Martin M Monti ([log in to unmask])
>> wrote:
>>
>>> Hi,
>>>
>>> if you recall I had a problem with a truncated .fsf file for a
>> FEAT
>>> analysis some days ago. I thought it was my mishandling of the
>>> file, but in fact I just noticed that when I save from the
>> FEAT_GUI
>>> the .fsf design, I get the following error and the file is
>>> truncated half a way:
>>>
>>> Error:
>>> can't read "fmri(evg3.1)": no such element in array
>>> can't read "fmri(evg3.1)": no such element in array
>>> while executing
>>> "puts $channel "
>>> # Higher-level EV value for EV $i and input $j
>>> set fmri(evg${j}.$i) $fmri(evg${j}.$i)""
>>> (procedure "feat5:write" line 533)
>>> invoked from within
>>> "feat5:write .r 1 1 0 /mounts/jukebox_static/osherson/mmonti/
>>> LingLog2/FSL/Group/Gr_15_OLS"
>>> ("uplevel" body line 1)
>>> invoked from within
>>> "uplevel #0 $cmd $args"
>>>
>>> I tried changing the order of my input to see whether it was a
>>> specific subject causing the problem but so far it doesn't seem
>> to
>>> be the case. It always truncates after the ninth line:
>>>
>>> [...]
>>>
>>> # 4D AVW data or FEAT directory (8)
>>> set feat_files(8)
>> "/mounts/jukebox_static/osherson/mmonti/LingLog2/
>>> FSL/MW/Scripts/MW_all.gfeat/cope1.feat"
>>>
>>> # 4D AVW data or FEAT directory (9)
>>> set feat_files(9) "/mounts/jukebox_static/osherson/mmonti/Ling
>>>
>>> [end of file]
>>>
>>> I tried re-doing the script from scratch, but got the same problem.
>>>
>>> Suggestions?
>>>
>>> thanks
>>>
>>> martin
>>
>>
>> --------------------------------------------------------------------
>> ----
>> ---
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> --------------------------------------------------------------------
>> ----
>> ---
>>
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|