Thanks to both of you! It was indeed a web browser problem (and, just for
future note, Opera and Explorer can't read #'s either). I didn't want to
replace the actual image filenames since that's how the data come off the
scanner and I want to keep it consistent with new data, but it was really
easy to just change the name of the png files in the slicesdir directory,
and then edit the index.html file accordingly.
cheers,
Katie
On 4/19/07 3:38 PM, "Jolinda Smith" <[log in to unmask]> wrote:
> If you are using my program MRIConvert, I can add '#' to the list of
> characters that should be converted to an '_' and that should help.
>
> --
> Jolinda Smith
> MR Physicist
> Lewis Center for Neuroimaging
> University of Oregon
> Eugene, OR 97403
> [log in to unmask]
>
> On Thu, 19 Apr 2007 20:27:49 +0100, Christian Beckmann
> <[log in to unmask]> wrote:
>> Hi Katie,
>>
>> it seems that this is a problem of the webbrowser. slicesdir appears
>> to process everything fine -including writing the HTML and creating
>> the png files, but the webbrowsers (I tried Safari and Firefox on mac
>> os x so far) can't deal with an image containing a '#' in it's name
>> correctly. In both cases the status bar claims that the link is to a
>> blah#blah.png file, but the display does not work. If you work on a
>> mac you can run 'open ./slicesdir/*png' instead, which opens all
>> images in Preview (if that's your png default) Otherwise I guess
>> you'll need to rename files - if you use a shell script it's quite
>> easy to rename all your files in ne go.
>> hope this helps
>> christian
>>
>>
>> On 19 Apr 2007, at 19:49, Katie Karlsgodt wrote:
>>
>>> Hi,
>>> I was just wondering if there are constraints on the image names (or
>>> anything else) that slicesdir can read in? My images come named as
>>> follows:
>>>
>>> 0000075_ep_b0_.hdr
>>> 0000075_ep_b0_.img
>>> 0000150_ep_b1000#0.hdr
>>> 0000150_ep_b1000#0.img
>>> 0000225_ep_b1000#1.hdr
>>> 0000225_ep_b1000#1.img
>>> 0000300_ep_b1000#2.hdr
>>> 0000300_ep_b1000#2.img
>>> 0000375_ep_b1000#3.hdr
>>> 0000375_ep_b1000#3.img
>>> 0000450_ep_b1000#4.hdr
>>> 0000450_ep_b1000#4.img
>>> 0000525_ep_b1000#5.hdr
>>> 0000525_ep_b1000#5.img
>>>
>>> I can look at them using slices, but I have a lot of directories
>>> and would
>>> like to be able to check the images all at once, and slicesdir
>>> won't make
>>> images of anything but the first image. I don't know if it is the #
>>> sign
>>> causing the problem or something else? Is there any way around it?
>>> the tool
>>> is so handy, I'd really like to use it for this if possible but
>>> also don't
>>> want to have to rename everything.
>>>
>>> thanks!
>>> Katie
>>
>> ____
>> Christian F. Beckmann
>> University Research Lecturer
>> Oxford University Centre for Functional MRI of the Brain (FMRIB)
>> John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK.
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~beckmann
>> tel: +44 1865 222551 fax: +44 1865 222717
>>
>
>
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