Dear All,
I am seeking for an advice.
I have a T1 acquired high res axials, full brain, with sufficient FOV.
Also I have BOLDs which are acquired at a manually tweaked orientation,
different resolution and smaller FOV which would not allow me to acquire
proper full brain in that orientation due to warp around due
to limiting FOV.
Since, if I get it correctly, DICOMs carry position/orientation of
the slices within (0020,0032) and (0020,0037) fields it is just a matter
of a simple linear algebra to get a FSL-compatible registration matrix
to operate on converted Dicom->Nifti files to register my BOLD slices
into the full brain anatomicals (assuming there is no motion). Is
there a simple way within FSL toolset to acquire such transformation
matrix or do I have to compute it manually? or may be I am missing some
piece to get such transformation computed?
Thanks in advance
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