Hi Mark,
sorry, it didn't work. I have tried it with your parameters, also with bet2
and dof=7. flirt version is 5.4.2. The main error in fslview is a shift in
the z direction. Have no other ideas than using flirt without bet, this
looks better but not perfect. What's criticaly when I don't using bet?
If it helps to find the problem, here is the matrix from flirt. Check it
with yours.
0.99996 0.00767671 -0.00456802 -39.9283
-0.00870712 0.951869 -0.30638 -0.400576
0.00199617 0.306408 0.951898 86.8124
0 0 0 1
Best
Jörg
|