Dear All
I had to return to nmrview today (but only for a little while ;-) and
I though the reasons why I had to do it might be informative
The specific task I wanted to do was to get an overview of what peaks
were assigned in an hsqc and whether all the large peaks were assigned.
The nice feature that nmrview has that really helps here is that it can
colour peaks by their status (assigned/unassigned, status, level error).
Also NMRview is quite good (though not really good) at producing susinct
labels for peaks on hsqc spectra. (My ideal would be to be able to label
the residue just by a residue / peak id or ss id and if need be a
chain id , e.g. A12 for resdidue 12 and {33} for peak 33 and [44] for
spin system 44 say (is that the right way round I can never remember
which is which with respect to {} brackets [] brackets vs spin systems
and peak ids) Even more importantly in this display mode if the
assignments for the two diemnsions are to the same residue it only shows
assignments for 1 dimension e.g '44.HN' not '44.H 44.N'
As another aside nmrview is also able to hide peaks by there assignment
status as well e.g show me all the unassigned peaks in this hsqc is
quite a useful state to be in when getting an overview. It does this by
defining a color none...
Hope this is informative
regards
gary
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Dr Gary Thompson
Astbury Centre for Structural Molecular Biology,
University of Leeds, Astbury Building,
Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
email: [log in to unmask] Fax +44-113-2331407
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