Dear Saad and Tim,
Thank you guys so much.
Now I am running the eddy_correct correctly.
After that, I will reconstruct the tensors to see the improvement.
Have a nice day.
Best Wishes
Jiali Cui
>>> Saad Jbabdi <[log in to unmask]> 02/21/07 12:36 PM >>>
Dear Jiali,
You cannot run eddy_correct (which calls avwsplit) from the
directory /usr/local/fsl/bin, as this script creates temporary files
in the same directory and then removes them. You might not have the
rights to write in this directory.
Instead, you can run it from your /home/cuij/3D as follows:
hippo:/home/cuij/3D> $FSLDIR/bin/eddy_correct mergeout_a /hippo_SAN/
jiali/temp/out 1
saad
On 21 Feb 2007, at 17:10, Jiali Cui wrote:
> Dear Timothy and all
>
> thank you for your quick response.
>
> And please see below for the results you want. If you need any
> other information, please let me know.
>
>
> ==
------------------------------------------------------------------------
---
Saad Jbabdi,
Postdoctoral Research Assistant,
Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222545 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~saad
------------------------------------------------------------------------
---
|