Sorry error file not attached to previous posting
Nick
--
Dr Nicholas H. Keep
Reader in Structural Biology
School of Crystallography,
Birkbeck, University of London,
Malet Street,
Bloomsbury
LONDON
WC1E 7HX
email [log in to unmask]
Telephone 020-7631-6852 (Room G57 Office)
020-7631-6868 (Rosalind Franklin Laboratory)
020-7631-6800 (Department Office)
Fax 020-7631-6803
If you want to access me in person you have to come to the
crystallography entrance
and ring me or the department office from the internal phone by the door
File "/d/programs/Aria2.1/aria2.1/aria2.py", line 862, in ?
verbose_level, use_condor=condor)
File "/d/programs/Aria2.1/aria2.1/aria2.py", line 781, in run_aria
project.go(use_condor)
File "/d/programs/Aria2.1/aria2.1/src/py/Project.py", line 1310, in go
self.run_protocol(first_iteration)
File "/d/programs/Aria2.1/aria2.1/src/py/Project.py", line 1316, in run_protocol
last_iteration = self.getProtocol().go(iteration, self.getMolecule())
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 1364, in go
iteration = self.start(iteration, molecule)
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 1348, in start
return self.run_protocol(molecule, iteration)
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 1737, in run_protocol
self.writeReports(iteration)
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 1236, in writeReports
self.dumpIteration(iteration)
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 1034, in dumpIteration
self._dump_ccpn(iteration, path)
File "/d/programs/Aria2.1/aria2.1/src/py/Protocol.py", line 890, in _dump_ccpn
structures = ccpnExport.getStructuresFromAria2Dir(path, chain)
File "/d/programs/Aria2.1/aria2.1/src/py/exportToCcpn.py", line 173, in getStructuresFromAria2Dir
structures.append( getStructureFromFile(chain.molSystem, fileName, doWarnings=False) )
File "/d/programs/ccpn11suse/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/StructureBasic.py", line 1194, in getStructureFromFile
structure = makeStructures(dict, molSystem, doWarnings=doWarnings)
File "/d/programs/ccpn11suse/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/StructureBasic.py", line 1235, in makeStructures
(systemChain,seqOffset,firstSysId) = findMatchingChain(molSystem, ccpCodes, excludeChains=usedChains)
TypeError: findMatchingChain() got an unexpected keyword argument 'excludeChains'
|