Hi,
You can use the make-na server http://structure.usc.edu/make-na/
which uses the Nucleic Acid Builder molecular manipulation language
http://www.scripps.edu/mb/case/casegr-sh-3.2.html.
Output will be a pdb file or a mmCIF if you want. Or you could also
download the program from the second site and install it on your machine
to run locally.
Cheers,
Debanu.
Ibrahim M. Moustafa wrote:
> Hi users,
>
> I'm looking for a software that can be used to make a crude 3D
> model from an RNA sequence and create a pdb file or other 3D-formats.
> It would be nice if the program would allow interactive editing for
> the built structure. Ultimately, I want to make a model of the RNA
> interacting with the protein of interest to help
> visualizing and interpreting some biochemical and genetic data.
>
> Hope someone of the RNA world can help in that.
>
> thanks,
> Ibrahim
>
> Ibrahim M.Moustafa, Ph.D.
> Pennsylvania State University
> Biochemistry & Molecular Biology Dept.
> 201 Althouse Lab.
> University Park, PA16802
>
> Tel (814) 863 8703
> Fax (814) 865 7927
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