I use this to get the same maps:
http://xanana.ucsc.edu/Library/init/zsh/local-functions/xtal/mapcover
http://xanana.ucsc.edu/Library/init/zsh/local-functions/xtal/mapcoverdiff
I used zsh but I think it should work with current versions of bash.
mac minista wrote:
> Dear all,
>
> I have noticed that going from refmac 5 (script) to generate fo-fc and
> 2fo-fc maps in O / Pymol once and Coot in the other, the outcome is not
> exactly the same electron density maps-I mean some differences are seen.
> I have used the following columns in Coot (latest version): FOFCWT,
> PHFOFCWT and 2FOFCWT, PH2FOFCWT. The .o map file was generated using
> FFT, MAPMASK and MAPMAN.
> I want to know why I am not getting identical maps, and if there is a
> solution to avoid this problem then I would really appreciate your help.
>
> With regards
> Mac
>
>
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