Hi Michel,
> I'm a little bit surprised to see that modulated normalized segmentation
> grey matter on SPM5 (default parameters) is not registered with my
> anatomical T1 MRI normalized (with the same transformation file) on SPM5
I'm very surprised! If you write out native space GM segs do these
appear well-aligned with your anatomical T1? If the segs are coming
from different images to the anat T1 are these well registered with
your anat T1 before normalisation? And if so, just how bad is the
misalignment after normalisation?
All I can say is that is applying the saved seg_sn.mat transformation
to a native space segmentation certainly does match its
"Segment"-normalised version.
Best,
Ged.
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