Hi - the design.fsf files are designed to be easily readable and self-
explanatory, I'm afraid there's no further doc on them; the hidden
settings (ie those that don't seem worth putting in the GUI) appear
at the very end of the design.fsf, i.e.
# Alternative example_func image (not derived from input 4D dataset)
set fmri(alternative_example_func) ""
# Delete GLM residuals?
set fmri(cleanup_residuals_yn) 1
# Initial structural space registration initialisation transform
set fmri(init_initial_highres) ""
# Structural space registration initialisation transform
set fmri(init_highres) ""
# Standard space registration initialisation transform
set fmri(init_standard) ""
The flag you've found (nonlinear reg) isn't turned on in the GUI yet
because we haven't finished integrating nonlinear reg into the
registration process - watch this space....
Cheers, Steve.
On 12 Feb 2007, at 10:41, Bertram Walter wrote:
> Dear experts!
>
> While editing the fsf file I found some interesting fields like non-
> linear
> registration...
>
> Two questions:
>
> - Is a manual for editing the fsf file available?
>
> - How a non-linear registration can be done with FSL?
>
> Best regards
>
> Bertram Walter
>
> Bender Institute of Neuroimaging
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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