Dear Gary,
This is an error we recognise, at leats in general terms. The solution is
to go into the ccpnmr/Analysis.xml file and remove all ChainMapping
elements together with their contents (ResidueMApping, AtomSetMapping,
etc.). The file will then load, and Analysis will generate a new and
correct set automagically when you start it up.
If you feel up to it, it should not be too difficult for you to do it
yourself. If not, please send up the Analysis.xml file, ad we will do it.
A minor comment. Please make sure you send the entire error message when
you report a problem. Any error that involves file loading will have a
long and varied error message, and I suspect that you sent us only the
last half. Anyway it is easier to disregard irrelevant messages than to
reconstruct missing ones.
Yours,
Rasmus
---------------------------------------------------------------------------
Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Wed, 21 Feb 2007, Gary S. Thompson wrote:
> Dear all
> we are trying to reload some old projects and having problems with
> back compatability. The crash we get is
>
> project invalid, please quit, fix and re-start:
>
> error loading filexml element
> <ChemAtomSet _ID="_10" subType=1 isEquivalent="false"
> isProchiral="true" distCorr="1.8" name="HB*">
>
> XML element has no attribute 'subType'
>
> on the console is the following
>
> last xml element read:
> <ChemAtomSet _ID="_10" subType="1" isEquivalent="false"
> isProchiral="true" distCorr="1.8" name="HB*">
>
>
> parser state was:
> reading
>
> ERROR loading xml ccp.ChemComp protein/MET.xml
> Error dereferencing link to ChemAtomSet from key:
> ['protein', 'MET', 'H*']
> Error dereferencing chemAtomSet for object
> ccpnmr.Analysis.AtomSetMapping with (partial) key :
> ['MS1', 'A', 1, 'Hn*']
>
> last xml element read:
> </_StorageUnit>
>
>
> parser state was:
> setting links and multiattributes
>
> ERROR loading xml ccpnmr.Analysis ccpnmr/Analysis.xml
>
>
> could you please help
>
> regards
> gary and arnout
>
>
> n.b. it would be really helpful if the error dialog spat it's text out to
> the python console or if the the error dialog had text that could be
> copied!
>
>
>
>
> --
> -------------------------------------------------------------------
> Dr Gary Thompson
> Astbury Centre for Structural Molecular Biology,
> University of Leeds, Astbury Building,
> Leeds, LS2 9JT, West-Yorkshire, UK Tel. +44-113-3433024
> email: [log in to unmask] Fax +44-113-2331407
> -------------------------------------------------------------------
>
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