I had a think about it the speed issues and fink installed CcpNmr.
Assuming you weer using the same python version of CcpNmr (ccpnmr-
py25), the speed issue could be down to having your .py files not
byte-compiled. This is often the case because the fink directory is
only root enabled. Once you update the .py files and run the program
as a non-root user, it would not get byte-compiled, and this would be
the case till that particular file is used with root privileges.
Hence, fink installed CcpNmr comes with a few scripts that you have
to run like any usual command from the command line; run ccpnmr-
bytecompile (after any of the .py files are update from within
analysis) & ccpnmr-postupdate (after any of the .c and/or .py files
are update from within analysis)
Hope this solves the problem. Please keep me updated on this.
On 12 Jan 2007, at 19:37, Johnny Croy wrote:
> Hello again.
>
> I posted earlier about CCPnmr running slow on my powerbook, but
> found that
> completely removing fink and reinstalling it helped tons in terms
> of speed.
> Instead of using the fink version of analysis, the package
> downloaded from
> the CCPNMR site is much better (speed wise).
>
> I am having one issue that I don't know how to fix. After staring
> analysis
> I get a number of errors that read,
>
> python2.5(6235) malloc: *** Deallocation of a pointer not malloced:
> 0x50db70; This could be a double free(), or free() called with the
> middle of
> an allocated block; Try setting environment variable MallocHelp to
> see tools
> to help debug
>
> Any ideas of what may be causing this? It apparently doesn't have any
> significant consequences when running analysis (at least yet!), so
> I will
> let you all know if I run into further problems. For reference, I
> am using
> the current analysis package with the fink compiled tcl/tk,
> python2.5 and
> mesa packages.
>
> -J
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