Hi - see the recent post on this:
http://www.jiscmail.ac.uk/cgi-bin/webadmin?
A2=ind0604&L=FSL&P=R10140&I=-3&X=234C845E70BC31BA94&Y=steve%
40fmrib.ox.ac.uk
(It's likely that you're coming up against the process size limit on
32-bit machines.)
Cheers, Steve.
On 20 Apr 2006, at 16:47, Matthew Hoptman wrote:
> Hi all,
> Thanks for writing the tbss program. It seems potentially very
> useful.
> I am, however, having trouble running it. I keep getting a crash
> on the
> tbss_4_prestats step (FSL error report attached).
>
> The message I get at the command line is:
> creating skeleton mask using threshold 2000
> creating skeleton distancemap (for use in projection search)
> projecting all FA data onto skeleton
> /home/fsl/bin/tbss_4_prestats: line 23: 926 Aborted
> ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh
> mean_FA_skeleton_mask_dst
> ${FSLDIR}/etc/standard/lower-cingulum all_FA all_FA_skeletonised
> now run stats - for example:
> randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d
> design.mat -t design.con -n 5000 -c 3 -V
> (after generating design.mat and design.con)
>
> The error appears to occur when the program tries to make the file
> all_FA_skeletonised. I have plenty of room for the file, and
> plenty of
> processing speed (I'm running a dual processor system with 4GB of
> RAM).
>
> Any suggestions?
> <fsl_ODxNby.gz>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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