for i in *FA*; do avwswapdim $i x -y z $i ;done
will flip all your FA maps in AP.
Cheers
T
On 17 Oct 2006, at 08:38, Martin Kavec wrote:
> Hello to everybody,
>
> After running tbss_3_postreg, I get very bad registration of
> mean_FA to MNI152. I guess it is because my original FA maps are
> flipped in A-P direction with respect to MNI152. I tried to A-P
> rotate $FSLDIR/etc/standard/avg152T1_brain, but the result was even
> worse. Is there any quick cure?
>
> Thanks in advance.
>
> Martin
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