Many thanks, Graham and Mark, for your help with this. Though it seems
to get more confusing the more I look!
Mark Jenkinson wrote:
...
> The avg152T1 image is our standard space image and has well
> defined real-world coordinates. It is these real-world coordinates
> that define it as being right-handed.
Okay, that makes sense. Although I am rather confused that this is
defined as radiological... Graham's page gives radiological as the
left-handed LAS system, no?
> any image that maps to the standard coordinate
> system with a negative determinant is considered "radiological"
> by our definition, with "neurological" ones having a positive determinant.
So you assume that the voxel coordinate system is always left-handed
then? Such that the negative determinant gives right-handed real-world
coords. Or am I still confused...
> Personally, I would have chosen different conventions, but we have
> to be consistent with the standard that was originally prepared and
> that was the avg152T1 images (or the avg305 images) which were
> prepared and shipped with the above conventions.
I completely understand that. There's still one thing I'm puzzled
about: do the medical conventions demand that views are placed
relative to each other as they are in FSLview, or is this a free
choice? Because it seems to me from viewing your very helpfully marked
image that the layout is not consistent with either standard for
orthographic projection. Moving the sagittal view to the left of the
coronal would give a valid third-angle projection without actually
changing the convention within any of the views. Is this reasonable?
The other alternative (for valid 3rd angle proj) would be to have the
sagittal view remain on the right, but be nose-left. Incidentally,
this seems to be the case for viewing the marked image in SPM5, but
I'm not sure if it's doing anything non-standard to achieve this?
Best,
Ged.
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