Hi,
This might be due to how the original image (statmap)
was formed. Can you describe how you generated it?
Also, please send us the output of avwhd on the input
and output files.
All the best,
Mark
On 22 Oct 2006, at 05:43, Rutvik Desai wrote:
> I am tring to apply a transformation matrix (calculated
> using flirt) to a statistical parametric map, but the output is
> not correct.
>
> flirt -in statmap.nii -init flirt.mat -applyxfm -ref anat.bet.nii -out
> statmap.reg
>
> The statmap has many datapoints per voxel (t-stats, betas, etc.),
> but the
> resulting statmap.reg has only one datapoint (only one BRIK in
> AFNI jargon) for some reason.
>
> If the same command is run with the raw data as input instead of the
> statmap, the output is correct as expected with all the datapoints.
> Any ideas?
>
> Thanks,
> Rutvik
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