Dear FSLer
My DTI images were acquired with coronal plane.
In fslview, axial images are fin superior left, sagittal images in superior
right, coronal images in inferior left.
How can I reorient images from coronal to axial.
These below are the information of header.
First one is the information of header of nii file which was transformed
from analyze format through adding nifti header.
Second one is the information of header of original analyze format file.
Thank you for advance
[root@localhost test]# avwhd 008_***.nii
Byte swapping
filename 008_***.nii
sizeof_hdr 348
data_type INT16
dim0 4
dim1 128
dim2 128
dim3 32
dim4 13
dim5 1
dim6 1
dim7 1
vox_units mm
time_units s
datatype 4
nbyper 2
bitpix 16
pixdim0 0.0000000000
pixdim1 1.7187500000
pixdim2 1.7187500000
pixdim3 4.0000000000
pixdim4 5.0000000000
pixdim5 1.0000000000
pixdim6 1.0000000000
pixdim7 1.0000000000
vox_offset 352
cal_max 0.0000
cal_min 0.0000
scl_slope 0.000000
scl_inter 0.000000
phase_dim 2
freq_dim 1
slice_dim 3
slice_name Unknown
slice_code 5
slice_start 0
slice_end 31
slice_duration 0.384615
time_offset 0.000000
intent Unknown
intent_code 0
intent_name
intent_p1 0.000000
intent_p2 0.000000
intent_p3 0.000000
qform_name Scanner Anat
qform_code 1
qto_xyz:1 1.718750 0.000000 -0.000000 -110.000000
qto_xyz:2 0.000000 0.000000 4.000000 64.000000
qto_xyz:3 0.000000 1.718750 -0.000000 -110.000000
qto_xyz:4 0.000000 0.000000 0.000000 1.000000
qform_xorient Left-to-Right
qform_yorient Inferior-to-Superior
qform_zorient Posterior-to-Anterior
sform_name Unknown
sform_code 0
sto_xyz:1 0.000000 0.000000 0.000000 0.000000
sto_xyz:2 0.000000 0.000000 0.000000 0.000000
sto_xyz:3 0.000000 0.000000 0.000000 0.000000
sto_xyz:4 0.000000 0.000000 0.000000 0.000000
sform_xorient Unknown
sform_yorient Unknown
sform_zorient Unknown
file_type NIFTI-1+
file_code 1
descrip test data
aux_file
[root@localhost test]# avwhd
/media/disk/dat_vm_result/1/001_20060415_2_02_ep2d_diff_DTI_12D_cor.hdr
Byte swapping
filename
/media/disk/dat_vm_result/1/001_20060415_2_02_ep2d_diff_DTI_12D_cor.hdr
sizeof_hdr 348
data_type SHORT
db_name
extents 16384
session_error 0
regular
hkey_un0
dim0 4
dim1 128
dim2 128
dim3 32
dim4 13
dim5 0
dim6 0
dim7 0
vox_units
cal_units
unused1 0
datatype 4
bitpix 16
pixdim0 0.0000000000
pixdim1 1.7187500000
pixdim2 1.7187500000
pixdim3 4.0000000000
pixdim4 4600.0000000000
pixdim5 0.0000000000
pixdim6 0.0000000000
pixdim7 0.0000000000
vox_offset 0.0000
funused1 0.0000
funused2 0.0000
funused3 0.0000
cal_max 0.0000
cal_min 0.0000
compressed 0
verified 0
glmax 1191181824
glmin 0
descrip ep2d_diff_DTI_12D_cor
aux_file
orient 0
originator
origin1 0
origin2 0
origin3 0
generated
scannum
patient_id
exp_date
exp_time
hist_un0
views 0
vols_added 0
start_field 0
field_skip 0
omax 0
omin 0
smin 0
smin 0
file_type ANALYZE-7.5
file_code 0
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