I am unable to get fsl to compile on 64bit redhat. Tried many suggests
elsewhere but have yet to resolve the issue. Any help would be appreciated.
Thank You
Here is the part of my build.log containing errors for tbss. The same errors
occurred with all in the !!ERROR in BUILD!!
!!ERROR in BUILD!!
Could not make the following projects successfully:
utils niftiio fslio miscmaths newimage libss libvis meshclass bint
avwutils bet bet2 cluster fdt feat5 film filmbabe flame flirt fugue mcflirt
melodic2 misc_c miscvis mm randomise siena slicetimer susan tbss
Making project src/tbss
c++ -Wall -ansi -pedantic -O3 -fexpensive-optimizations
-I/usr/local/pkg/fsl/extras/include/newmat
-I/usr/local/pkg/fsl/extras/include/zlib -I. -I/usr/local/pkg/fsl/include
-I/usr/local/pkg/fsl/include -L/usr/local/pkg/fsl/extras/lib
-L/usr/local/pkg/fsl/extras/lib -L. -L/usr/local/pkg/fsl/lib
-L/usr/local/pkg/fsl/lib -o distancemap distancemap.cc -lnewimage
-lmiscmaths -lprob -lfslio -lniftiio -lznz -lnewmat -lutils -lm -lz
distancemap.cc:70:27: utils/options.h: No such file or directory
distancemap.cc:71:34: newimage/newimageall.h: No such file or directory
distancemap.cc:72:33: miscmaths/miscmaths.h: No such file or directory
distancemap.cc:77: error: `Utilities' is not a namespace-name
distancemap.cc:77: error: expected namespace-name before ';' token
distancemap.cc:78: error: `MISCMATHS' is not a namespace-name
distancemap.cc:78: error: expected namespace-name before ';' token
distancemap.cc:79: error: `NEWIMAGE' is not a namespace-name
distancemap.cc:79: error: expected namespace-name before ';' token
distancemap.cc:81: error: `string' does not name a type
distancemap.cc:81: error: extra `;'
distancemap.cc:82: error: `string' does not name a type
distancemap.cc:82: error: extra `;'
distancemap.cc:85: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:88: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:91: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:94: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:97: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:100: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:103: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:106: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:109: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:125: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:126: error: `Matrix' does not name a type
distancemap.cc:126: error: extra `;'
distancemap.cc:132: error: expected `,' or `...' before '<' token
distancemap.cc:133: error: ISO C++ forbids declaration of `volume' with no type
distancemap.cc: In function `int setup_globals(int)':
distancemap.cc:140: error: `octantsign' was not declared in this scope
distancemap.cc:150: error: `vin' was not declared in this scope
distancemap.cc:160: error: `norm2' was not declared in this scope
distancemap.cc:162: error: `schedule' was not declared in this scope
distancemap.cc:160: warning: unused variable 'norm2'
distancemap.cc:162: warning: unused variable 'schedule'
distancemap.cc:169: error: `schedule' was not declared in this scope
distancemap.cc:169: error: `sort' was not declared in this scope
distancemap.cc:169: warning: unused variable 'sort'
distancemap.cc: At global scope:
distancemap.cc:173: error: expected `,' or `...' before '<' token
distancemap.cc:175: error: ISO C++ forbids declaration of `volume' with no type
distancemap.cc: In function `int find_nearest(int)':
distancemap.cc:176: error: `schedule' was not declared in this scope
distancemap.cc:179: error: `MISCMATHS' has not been declared
distancemap.cc:179: error: `octantsign' was not declared in this scope
distancemap.cc:179: error: `round' was not declared in this scope
distancemap.cc:180: error: `MISCMATHS' has not been declared
distancemap.cc:181: error: `MISCMATHS' has not been declared
distancemap.cc:182: error: `vin' was not declared in this scope
distancemap.cc:182: error: `x' was not declared in this scope
distancemap.cc:182: error: `y' was not declared in this scope
distancemap.cc:182: error: `z' was not declared in this scope
distancemap.cc:184: error: `x1' was not declared in this scope
distancemap.cc:184: error: `y1' was not declared in this scope
distancemap.cc:184: error: `z1' was not declared in this scope
distancemap.cc:184: warning: unused variable 'x1'
distancemap.cc:184: warning: unused variable 'y1'
distancemap.cc:184: warning: unused variable 'z1'
distancemap.cc:190: error: `x1' was not declared in this scope
distancemap.cc:190: error: `x' was not declared in this scope
distancemap.cc:190: error: `MISCMATHS' has not been declared
distancemap.cc:190: error: `schedule' was not declared in this scope
distancemap.cc:190: error: `round' was not declared in this scope
distancemap.cc:191: error: `y1' was not declared in this scope
distancemap.cc:191: error: `y' was not declared in this scope
distancemap.cc:191: error: `MISCMATHS' has not been declared
distancemap.cc:192: error: `z1' was not declared in this scope
distancemap.cc:192: error: `z' was not declared in this scope
distancemap.cc:192: error: `MISCMATHS' has not been declared
distancemap.cc:190: warning: unused variable 'x1'
distancemap.cc:190: warning: unused variable 'x'
distancemap.cc:191: warning: unused variable 'y1'
distancemap.cc:191: warning: unused variable 'y'
distancemap.cc:192: warning: unused variable 'z1'
distancemap.cc:192: warning: unused variable 'z'
distancemap.cc: At global scope:
distancemap.cc:198: error: expected constructor, destructor, or type
conversion before '<' token
distancemap.cc:247: error: variable or field `create_distancemap' declared void
distancemap.cc:247: error: `volume' was not declared in this scope
distancemap.cc:247: error: expected primary-expression before "float"
distancemap.cc:247: error: expected primary-expression before "const"
distancemap.cc:248: error: expected primary-expression before "const"
distancemap.cc:248: error: expected primary-expression before "bool"
distancemap.cc:249: error: initializer expression list treated as compound
expression
distancemap.cc:249: error: expected `,' or `;' before '{' token
distancemap.cc: In function `int do_work(int, char**)':
distancemap.cc:276: error: `volume' was not declared in this scope
distancemap.cc:276: error: expected primary-expression before "float"
distancemap.cc:276: error: expected `;' before "float"
distancemap.cc:277: error: `vin' was not declared in this scope
distancemap.cc:277: error: `inname' was not declared in this scope
distancemap.cc:277: error: `read_volume' was not declared in this scope
distancemap.cc:278: error: `invertinput' was not declared in this scope
distancemap.cc:279: error: `binarise' was not declared in this scope
distancemap.cc:279: warning: unused variable 'binarise'
distancemap.cc:278: warning: unused variable 'invertinput'
distancemap.cc:282: error: `dmap' was not declared in this scope
distancemap.cc:283: error: `maskname' was not declared in this scope
distancemap.cc:284: error: `mask' was not declared in this scope
distancemap.cc:284: warning: unused variable 'mask'
distancemap.cc:287: error: `mask' was not declared in this scope
distancemap.cc:287: error: `binarise' was not declared in this scope
distancemap.cc:287: warning: unused variable 'mask'
distancemap.cc:287: warning: unused variable 'binarise'
distancemap.cc:290: error: `verbose' was not declared in this scope
distancemap.cc:290: error: `cout' was not declared in this scope
distancemap.cc:290: error: `endl' was not declared in this scope
distancemap.cc:290: warning: unused variable 'cout'
distancemap.cc:290: warning: unused variable 'endl'
distancemap.cc:290: warning: unused variable 'verbose'
distancemap.cc:291: error: `mask' was not declared in this scope
distancemap.cc:291: error: `create_distancemap' cannot be used as a function
distancemap.cc:292: error: `outname' was not declared in this scope
distancemap.cc:292: error: `save_volume' was not declared in this scope
distancemap.cc:294: error: `labelname' was not declared in this scope
distancemap.cc:294: error: `segmentname' was not declared in this scope
distancemap.cc:295: error: `verbose' was not declared in this scope
distancemap.cc:295: error: `cout' was not declared in this scope
distancemap.cc:295: error: `endl' was not declared in this scope
distancemap.cc:295: warning: unused variable 'cout'
distancemap.cc:295: warning: unused variable 'endl'
distancemap.cc:295: warning: unused variable 'verbose'
distancemap.cc:296: error: expected primary-expression before "float"
distancemap.cc:296: error: expected `;' before "float"
distancemap.cc:297: error: `label' was not declared in this scope
distancemap.cc:297: error: `label_local_maxima' was not declared in this scope
distancemap.cc:300: error: `verbose' was not declared in this scope
distancemap.cc:300: error: `cout' was not declared in this scope
distancemap.cc:300: error: `endl' was not declared in this scope
distancemap.cc:300: warning: unused variable 'cout'
distancemap.cc:300: warning: unused variable 'endl'
distancemap.cc:300: warning: unused variable 'verbose'
distancemap.cc:301: error: `create_distancemap' cannot be used as a function
distancemap.cc:297: warning: unused variable 'label_local_maxima'
distancemap.cc:277: warning: unused variable 'inname'
distancemap.cc:292: warning: unused variable 'outname'
distancemap.cc: In function `int main(int, char**)':
distancemap.cc:313: error: `Tracer' was not declared in this scope
distancemap.cc:313: error: expected `;' before "tr"
distancemap.cc:314: error: `OptionParser' was not declared in this scope
distancemap.cc:314: error: expected `;' before "options"
distancemap.cc:317: error: `options' was not declared in this scope
distancemap.cc:317: error: `inname' was not declared in this scope
distancemap.cc:318: error: `outname' was not declared in this scope
distancemap.cc:319: error: `maskname' was not declared in this scope
distancemap.cc:320: error: `labelname' was not declared in this scope
distancemap.cc:321: error: `segmentname' was not declared in this scope
distancemap.cc:322: error: `invertinput' was not declared in this scope
distancemap.cc:323: error: `verbose' was not declared in this scope
distancemap.cc:324: error: `help' was not declared in this scope
distancemap.cc:333: error: `EXIT_FAILURE' was not declared in this scope
distancemap.cc:333: error: `exit' was not declared in this scope
distancemap.cc:333: warning: unused variable 'EXIT_FAILURE'
distancemap.cc:333: warning: unused variable 'exit'
distancemap.cc:317: warning: unused variable 'inname'
distancemap.cc:318: warning: unused variable 'outname'
distancemap.cc:319: warning: unused variable 'maskname'
distancemap.cc:320: warning: unused variable 'labelname'
distancemap.cc:321: warning: unused variable 'segmentname'
distancemap.cc:322: warning: unused variable 'invertinput'
distancemap.cc:323: warning: unused variable 'verbose'
distancemap.cc:336: error: `X_OptionError' has not been declared
distancemap.cc:336: error: invalid catch parameter
distancemap.cc:337: error: `options' was not declared in this scope
distancemap.cc:338: error: `cerr' was not declared in this scope
distancemap.cc:338: error: `endl' was not declared in this scope
distancemap.cc:338: error: `e' was not declared in this scope
distancemap.cc:339: error: `EXIT_FAILURE' was not declared in this scope
distancemap.cc:339: error: `exit' was not declared in this scope
distancemap.cc:337: warning: unused variable 'options'
distancemap.cc:338: warning: unused variable 'cerr'
distancemap.cc:338: warning: unused variable 'e'
distancemap.cc:339: warning: unused variable 'EXIT_FAILURE'
distancemap.cc:339: warning: unused variable 'exit'
distancemap.cc:340: error: `std::exception' has not been declared
distancemap.cc:340: error: invalid catch parameter
distancemap.cc:341: error: `cerr' was not declared in this scope
distancemap.cc:341: error: `e' was not declared in this scope
distancemap.cc:341: error: `endl' was not declared in this scope
distancemap.cc:341: warning: unused variable 'cerr'
distancemap.cc:341: warning: unused variable 'e'
distancemap.cc:341: warning: unused variable 'endl'
distancemap.cc:336: error: `...' handler must be the last handler for its
try block
distancemap.cc:313: warning: unused variable 'Tracer'
distancemap.cc:314: warning: unused variable 'OptionParser'
make: *** [distancemap] Error 1
c++ -Wall -ansi -pedantic -O3 -fexpensive-optimizations
-I/usr/local/pkg/fsl/extras/include/newmat
-I/usr/local/pkg/fsl/extras/include/zlib -I. -I/usr/local/pkg/fsl/include
-I/usr/local/pkg/fsl/include -L/usr/local/pkg/fsl/extras/lib
-L/usr/local/pkg/fsl/extras/lib -L. -L/usr/local/pkg/fsl/lib
-L/usr/local/pkg/fsl/lib -o tbss_skeleton tbss_skeleton.cc -lnewimage
-lmiscmaths -lprob -lfslio -lniftiio -lznz -lnewmat -lutils -lm -lz
tbss_skeleton.cc:74:34: newimage/newimageall.h: No such file or directory
tbss_skeleton.cc:75:33: miscmaths/miscmaths.h: No such file or directory
tbss_skeleton.cc:76:27: utils/options.h: No such file or directory
tbss_skeleton.cc:78: error: `MISCMATHS' is not a namespace-name
tbss_skeleton.cc:78: error: expected namespace-name before ';' token
tbss_skeleton.cc:79: error: `NEWIMAGE' is not a namespace-name
tbss_skeleton.cc:79: error: expected namespace-name before ';' token
tbss_skeleton.cc:80: error: `Utilities' is not a namespace-name
tbss_skeleton.cc:80: error: expected namespace-name before ';' token
tbss_skeleton.cc:82: error: `string' does not name a type
tbss_skeleton.cc:82: error: extra `;'
tbss_skeleton.cc:83: error: `string' does not name a type
tbss_skeleton.cc:83: error: extra `;'
tbss_skeleton.cc:85: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc:88: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc:91: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc:94: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc:97: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc:100: error: expected constructor, destructor, or type
conversion before '<' token
tbss_skeleton.cc: In function `int main(int, char**)':
tbss_skeleton.cc:114: error: `Tracer' was not declared in this scope
tbss_skeleton.cc:114: error: expected `;' before "tr"
tbss_skeleton.cc:115: error: `OptionParser' was not declared in this scope
tbss_skeleton.cc:115: error: expected `;' before "options"
tbss_skeleton.cc:118: error: `options' was not declared in this scope
tbss_skeleton.cc:118: error: `inname' was not declared in this scope
tbss_skeleton.cc:119: error: `outname' was not declared in this scope
tbss_skeleton.cc:120: error: `debugging' was not declared in this scope
tbss_skeleton.cc:121: error: `projectargs' was not declared in this scope
tbss_skeleton.cc:122: error: `alt4Dname' was not declared in this scope
tbss_skeleton.cc:123: error: `help' was not declared in this scope
tbss_skeleton.cc:132: error: `EXIT_FAILURE' was not declared in this scope
tbss_skeleton.cc:132: error: `exit' was not declared in this scope
tbss_skeleton.cc:132: warning: unused variable 'EXIT_FAILURE'
tbss_skeleton.cc:132: warning: unused variable 'exit'
tbss_skeleton.cc:118: warning: unused variable 'inname'
tbss_skeleton.cc:119: warning: unused variable 'outname'
tbss_skeleton.cc:120: warning: unused variable 'debugging'
tbss_skeleton.cc:121: warning: unused variable 'projectargs'
tbss_skeleton.cc:122: warning: unused variable 'alt4Dname'
tbss_skeleton.cc:135: error: `X_OptionError' has not been declared
tbss_skeleton.cc:135: error: invalid catch parameter
tbss_skeleton.cc:136: error: `options' was not declared in this scope
tbss_skeleton.cc:137: error: `cerr' was not declared in this scope
tbss_skeleton.cc:137: error: `endl' was not declared in this scope
tbss_skeleton.cc:137: error: `e' was not declared in this scope
tbss_skeleton.cc:138: error: `EXIT_FAILURE' was not declared in this scope
tbss_skeleton.cc:138: error: `exit' was not declared in this scope
tbss_skeleton.cc:136: warning: unused variable 'options'
tbss_skeleton.cc:137: warning: unused variable 'cerr'
tbss_skeleton.cc:137: warning: unused variable 'e'
tbss_skeleton.cc:138: warning: unused variable 'EXIT_FAILURE'
tbss_skeleton.cc:138: warning: unused variable 'exit'
tbss_skeleton.cc:139: error: `std::exception' has not been declared
tbss_skeleton.cc:139: error: invalid catch parameter
tbss_skeleton.cc:140: error: `cerr' was not declared in this scope
tbss_skeleton.cc:140: error: `e' was not declared in this scope
tbss_skeleton.cc:140: error: `endl' was not declared in this scope
tbss_skeleton.cc:140: warning: unused variable 'cerr'
tbss_skeleton.cc:140: warning: unused variable 'e'
tbss_skeleton.cc:140: warning: unused variable 'endl'
tbss_skeleton.cc:135: error: `...' handler must be the last handler for its
try block
tbss_skeleton.cc:145: error: `volume' was not declared in this scope
tbss_skeleton.cc:145: error: expected primary-expression before "float"
tbss_skeleton.cc:145: error: expected `;' before "float"
tbss_skeleton.cc:146: error: `im' was not declared in this scope
tbss_skeleton.cc:146: error: `inname' was not declared in this scope
tbss_skeleton.cc:146: error: `read_volume' was not declared in this scope
tbss_skeleton.cc:150: error: expected primary-expression before "short"
tbss_skeleton.cc:150: error: expected `;' before "short"
tbss_skeleton.cc:154: error: `X' was not declared in this scope
tbss_skeleton.cc:154: error: `Y' was not declared in this scope
tbss_skeleton.cc:154: error: `Z' was not declared in this scope
tbss_skeleton.cc:173: error: `sqrt' was not declared in this scope
tbss_skeleton.cc:178: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:178: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:178: error: `round' was not declared in this scope
tbss_skeleton.cc:178: error: `Min' was not declared in this scope
tbss_skeleton.cc:178: error: `Max' was not declared in this scope
tbss_skeleton.cc:179: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:179: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:180: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:180: error: `MISCMATHS' has not been declared
tbss_skeleton.cc:193: error: `pow' was not declared in this scope
tbss_skeleton.cc:193: warning: unused variable 'pow'
tbss_skeleton.cc:173: warning: unused variable 'sqrt'
tbss_skeleton.cc:219: error: `debugging' was not declared in this scope
tbss_skeleton.cc:221: error: `volume4D' was not declared in this scope
tbss_skeleton.cc:221: error: expected primary-expression before "float"
tbss_skeleton.cc:221: error: expected `;' before "float"
tbss_skeleton.cc:222: error: `tmpim' was not declared in this scope
tbss_skeleton.cc:222: error: `copybasicproperties' was not declared in this
scope
tbss_skeleton.cc:228: error: `sqrt' was not declared in this scope
tbss_skeleton.cc:228: warning: unused variable 'sqrt'
tbss_skeleton.cc:238: error: `save_volume4D' was not declared in this scope
tbss_skeleton.cc:221: warning: unused variable 'volume4D'
tbss_skeleton.cc:222: warning: unused variable 'copybasicproperties'
tbss_skeleton.cc:238: warning: unused variable 'save_volume4D'
tbss_skeleton.cc:219: warning: unused variable 'debugging'
tbss_skeleton.cc:246: error: expected primary-expression before "short"
tbss_skeleton.cc:246: error: expected `;' before "short"
tbss_skeleton.cc:250: error: `XX' was not declared in this scope
tbss_skeleton.cc:250: error: `YY' was not declared in this scope
tbss_skeleton.cc:250: error: `ZZ' was not declared in this scope
tbss_skeleton.cc:289: error: `debugging' was not declared in this scope
tbss_skeleton.cc:291: error: `volume4D' was not declared in this scope
tbss_skeleton.cc:291: error: expected primary-expression before "float"
tbss_skeleton.cc:291: error: expected `;' before "float"
tbss_skeleton.cc:292: error: `tmpim' was not declared in this scope
tbss_skeleton.cc:292: error: `copybasicproperties' was not declared in this
scope
tbss_skeleton.cc:298: error: `sqrt' was not declared in this scope
tbss_skeleton.cc:298: warning: unused variable 'sqrt'
tbss_skeleton.cc:308: error: `save_volume4D' was not declared in this scope
tbss_skeleton.cc:291: warning: unused variable 'volume4D'
tbss_skeleton.cc:292: warning: unused variable 'copybasicproperties'
tbss_skeleton.cc:308: warning: unused variable 'save_volume4D'
tbss_skeleton.cc:289: warning: unused variable 'debugging'
tbss_skeleton.cc:316: error: expected primary-expression before "float"
tbss_skeleton.cc:316: error: expected `;' before "float"
tbss_skeleton.cc:317: error: `tmpim' was not declared in this scope
tbss_skeleton.cc:334: error: `outname' was not declared in this scope
tbss_skeleton.cc:335: error: `save_volume' was not declared in this scope
tbss_skeleton.cc:335: warning: unused variable 'save_volume'
tbss_skeleton.cc:339: error: `projectargs' was not declared in this scope
tbss_skeleton.cc:343: error: `atof' was not declared in this scope
tbss_skeleton.cc:345: error: expected primary-expression before "float"
tbss_skeleton.cc:345: error: expected `;' before "float"
tbss_skeleton.cc:346: error: `distancemap' was not declared in this scope
tbss_skeleton.cc:348: error: expected primary-expression before "int"
tbss_skeleton.cc:348: error: expected `;' before "int"
tbss_skeleton.cc:349: error: `lowercingulum' was not declared in this scope
tbss_skeleton.cc:351: error: `volume4D' was not declared in this scope
tbss_skeleton.cc:351: error: expected primary-expression before "float"
tbss_skeleton.cc:351: error: expected `;' before "float"
tbss_skeleton.cc:352: error: `data_4d' was not declared in this scope
tbss_skeleton.cc:352: error: `read_volume4D' was not declared in this scope
tbss_skeleton.cc:354: error: expected primary-expression before "float"
tbss_skeleton.cc:354: error: expected `;' before "float"
tbss_skeleton.cc:355: error: `alt4Dname' was not declared in this scope
tbss_skeleton.cc:356: error: `alt_data_4d' was not declared in this scope
tbss_skeleton.cc:356: warning: unused variable 'alt_data_4d'
tbss_skeleton.cc:358: error: expected primary-expression before "float"
tbss_skeleton.cc:358: error: expected `;' before "float"
tbss_skeleton.cc:359: error: `data_4d_projected' was not declared in this scope
tbss_skeleton.cc:363: error: expected primary-expression before "short"
tbss_skeleton.cc:363: error: expected `;' before "short"
tbss_skeleton.cc:365: error: `debugging' was not declared in this scope
tbss_skeleton.cc:367: error: `tmpimFLOWx' was not declared in this scope
tbss_skeleton.cc:368: error: `tmpimFLOWy' was not declared in this scope
tbss_skeleton.cc:369: error: `tmpimFLOWz' was not declared in this scope
tbss_skeleton.cc:370: error: `copybasicproperties' was not declared in this
scope
tbss_skeleton.cc:365: warning: unused variable 'debugging'
tbss_skeleton.cc:387: error: `alt4Dname' was not declared in this scope
tbss_skeleton.cc:387: error: `alt_data_4d' was not declared in this scope
tbss_skeleton.cc:387: warning: unused variable 'alt_data_4d'
tbss_skeleton.cc:387: warning: unused variable 'alt4Dname'
tbss_skeleton.cc:404: error: `exp' was not declared in this scope
tbss_skeleton.cc:413: error: `alt4Dname' was not declared in this scope
tbss_skeleton.cc:413: error: `alt_data_4d' was not declared in this scope
tbss_skeleton.cc:413: warning: unused variable 'alt_data_4d'
tbss_skeleton.cc:413: warning: unused variable 'alt4Dname'
tbss_skeleton.cc:404: warning: unused variable 'exp'
tbss_skeleton.cc:429: error: `exp' was not declared in this scope
tbss_skeleton.cc:431: error: `sqrt' was not declared in this scope
tbss_skeleton.cc:439: error: `round' was not declared in this scope
tbss_skeleton.cc:455: error: `alt4Dname' was not declared in this scope
tbss_skeleton.cc:455: error: `alt_data_4d' was not declared in this scope
tbss_skeleton.cc:455: warning: unused variable 'alt_data_4d'
tbss_skeleton.cc:455: warning: unused variable 'alt4Dname'
tbss_skeleton.cc:429: warning: unused variable 'exp'
tbss_skeleton.cc:431: warning: unused variable 'sqrt'
tbss_skeleton.cc:468: error: `debugging' was not declared in this scope
tbss_skeleton.cc:470: error: `tmpimFLOWx' was not declared in this scope
tbss_skeleton.cc:471: error: `tmpimFLOWy' was not declared in this scope
tbss_skeleton.cc:472: error: `tmpimFLOWz' was not declared in this scope
tbss_skeleton.cc:470: warning: unused variable 'tmpimFLOWx'
tbss_skeleton.cc:471: warning: unused variable 'tmpimFLOWy'
tbss_skeleton.cc:472: warning: unused variable 'tmpimFLOWz'
tbss_skeleton.cc:468: warning: unused variable 'debugging'
tbss_skeleton.cc:479: error: `alt_data_4d' was not declared in this scope
tbss_skeleton.cc:480: error: `save_volume4D' was not declared in this scope
tbss_skeleton.cc:484: error: `debugging' was not declared in this scope
tbss_skeleton.cc:486: error: `tmpimFLOWx' was not declared in this scope
tbss_skeleton.cc:487: error: `tmpimFLOWy' was not declared in this scope
tbss_skeleton.cc:488: error: `tmpimFLOWz' was not declared in this scope
tbss_skeleton.cc:486: warning: unused variable 'tmpimFLOWx'
tbss_skeleton.cc:487: warning: unused variable 'tmpimFLOWy'
tbss_skeleton.cc:488: warning: unused variable 'tmpimFLOWz'
tbss_skeleton.cc:484: warning: unused variable 'debugging'
tbss_skeleton.cc:343: warning: unused variable 'atof'
tbss_skeleton.cc:479: warning: unused variable 'alt_data_4d'
tbss_skeleton.cc:114: warning: unused variable 'Tracer'
tbss_skeleton.cc:115: warning: unused variable 'OptionParser'
make: *** [tbss_skeleton] Error 1
/bin/cp lower-cingulum* example_FA_target* /usr/local/pkg/fsl/etc/standard
make: Target `all' not remade because of errors.
=========================
ERROR::Could not make tbss successfully
!!ERROR in BUILD!!
Could not make the following projects successfully:
utils niftiio fslio miscmaths newimage libss libvis meshclass bint
avwutils bet bet2 cluster fdt feat5 film filmbabe flame flirt fugue mcflirt
melodic2 misc_c miscvis mm randomise siena slicetimer susan tbss
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