*** CALL FOR POSTERS AND PARTICIPATION ***
3rd Integrative Bioinformatics Workshop
September 4-6, 2006
Rothamsted Research, Harpenden, Hertfordshire, United Kindom
http://www.rothamsted.bbsrc.ac.uk/bab/conf/ibiof/
IMPORTANT DATES (please note that the dates have been revised!!!)
August 14: Registration for participation deadline
August 21: Poster submission deadline
INVITED SPEAKERS
Steve Gardner, Chief Technology Officer, Biowisdom, UK "Semantic
Integration, SRS and the Meaning of Life (Sciences)"
Gunaretnam Rajagopal, Deputy Director, Bioinformatics Institute,
Singapore "BioComputing@Biopolis - Opening New Frontiers at the Interface
of Computing, Biology and Medicine"
Tom Oinn, Taverna project leader, EBI
"Services, Semantics and Workflows in eScience"
Pedro Mendes, Virginia Bioinformatics Institute, USA
PRELIMINARY PROGRAMME
Monday 4th September 2006
11:30 Registration desk opens
12:30 Lunch (buffet style)
13:10 Welcome followed by some administrivia
Session 1 - Database Integration and Integrative Databases
13:20 (keynote) Semantic Integration, SRS and the Meaning of Life
(Sciences)
Steve Gardner (Biowisdom, UK)
14:00 CoryneRegNet 2: An Integrative Bioinformatics Approach for
Reconstruction
and Comparison of Transcriptional Regulatory Networks in
Prokaryotes
Baumbach, J; Brinkrolf, K; Wittkop, T; Tauch, A; Rahmann, S
14:25 Analysing Microarray Data using the Multi-functional Immune
Ontologiser
Khalid, S; Fraser, K; Khan, M; Wang, P; Liu, X; Li, S
14:50 The BioRS(TM) Integration and Retrieval System: An open system for
distributed data integration
Kaps, A; Dyshlevoi, K; Heumann, K; Jost, R; Kontodinas, I; Wolff,
M; Hani, J
15:15 Integration of Protein and Protein-Protein Interaction Data:
Feasibility
Report using Microsoft .NET
Straßer, W; Siegl, D; Önder, K; Bauer, J
15:40 Coffee break
16:00 BN++ - A Biological Information System
Küntzer, J; Blum, T; Gerasch, A; Backes, C; Hildebrandt, A;
Kaufmann,
M; Kohlbacher, O; Lenhof, HP
16:25 MILAN - A medical information-system linking agents to metabolic
networks
Prins, B; Hofestädt, R
16:50 Data Cleaning and Semantic Improvement in Biological Databases
Apiletti, D; Bruno, G; Ficarra, E; Baralis, E
17:15 Drinks and Poster Session
Tuesday 5th September 2006
09:30 Coach from recommended hotel
Session 2 - Integrative Systems Biology (Modelling and Simulation)
10:00 (keynote) Title to be announced
Pedro Mendes (Virginia Bioinformatics Institute, USA)
10:40 Noise in Genetic Toggle Switch Models
Andrecut, M; Kauffman, SA
11:05 BASIS: an internet resource for network modelling
Gillespie, CS; Wilkinson, DJ; Shanley, DP; Proctor, CJ; Boys, RJ;
Kirkwood, TBL
11:30 Coffee break
11:45 Overview of the contributions of the SBML Team to the formalisation
and
systematic storage of models of biochemical reaction networks.
Keating, SM; Bornstein, BJ; Finney, A; Hucka, M
12:10 The implications for Bioinformatics of integration across physical
scales
Hodgman, TC; Ugartechea-Chirino, Y; Tansley, G; Dryden, I
12:35 A Graphical Notation to Describe the Logical Interactions of
Biological
Pathways
Moodie, SL; Sorokin, A; Goryanin, I; Ghazal, P
13:00 Exact and Approximate Stochastic Simulations of the MAPK Pathway and
Comparisons of Simulations’ Results
Purutcuoglu, V; Wit, E
13:25 Lunch (buffet style)
Session 3 Integrative Systems Biology (Networks)
14:20 keynote BioComputing@Biopolis - Opening New Frontiers at the
Interface of
Computing, Biology and Medicine
Gunaretnam Rajagopal (Bioinformatics Institute, Singapore)
15:00 Statistical Embedding in Complex Biosystems
Capobianco, E
15:25 An assessment of machine and statistical learning approaches to
inferring
networks of protein-protein interactions
Azuaje, F
15:50 Multi-model inference of network properties from incomplete data
Stumpf, MPH; Thorne, T
16:15 Coffee break
Session 4 Data Analysis and Interpretation (Transcriptomics)
16:30 Co-expressed gene groups analysis (CGGA): An automatic tool for the
interpretation of microarray experiments
Martinez, R; Pasquier, N; Collard, M; Lopez, L; Pasquier, C
16:55 Combining biomedical knowledge and transcriptomic data to extract
new
knowledge on genes
Guérin, E; Marquet, G; Chabalier, J; Troadec, M-B; Guguen-
Guillouzo, C;
Loréal, O; Burgun, A; Moussouni, F
17:20 Inference of Gene Coexpression Networks by Integrative Analysis
across
Microarray Experiments
Elo, LL; Lahesmaa, R; Aittokallio, T
17:45 Modelling Microarray Data: Interpreting and communicating the
biological
results
Pittelkow, YE; Wilson, SR
18:10 Targeted Projection Pursuit Tool for Gene Expression Visualisation
Faith, J; Brockway, M
18:35 Poster session and Bar opens
19:30 Conference dinner
Wednesday 6th September 2006
09:30 Coach from recommended hotel
Session 5 Data Analysis and Interpretation
10:00 (keynote) Services, Semantics and Workflows in eScience
Tom Oinn (European Bioinformatics Institute, UK)
10:40 Metabolite profiles as a reflection of physiological status - a
methodological
validation
Steinfath, M; Repsilber, D; Hische, M; Schauer, N; Fernie, A;
Selbig, J
11:05 A First Step towards Learning which uORFs Regulate Gene Expression
Selpi, S; Bryant, CH; Kemp, GJL; Cvijovic, M
11:30 Coffee break
11:50 Prediction of transcription factor binding to DNA using rule
induction methods
Huss, M; Nordström, K
12:15 Functional diversity within protein superfamilies
Casbon, J; Saqi, M
12:40 Closing remarks
12:50 Lunch (buffet style)
Depart
ORGANISING COMMITTEE
Julio Collado-Vides UNAM, Mexico
Ralf Hofestädt Bielefeld University, Germany
Paul Kersey EBI, UK
Jacob Koehler RRes, UK
Chris Rawlings RRes, UK
Uwe Scholz IPK Gatersleben, Germany
Paul Verrier RRes, UK
CONTACT
Karen Morris, BAB Division, Rothamsted Research, West Common, Harpenden,
Herts. AL5 2JQ, UK [log in to unmask]
tel: 01582 763133 ext 2813
fax: 01582 467907
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