Hi Anna,
after downloading, you have to use an archive extraction program like
winzip or total commander that can handle .tgz archives. The archive
should contain a spm_orthviews folder, which you can unzip directly
into you SPM2 software folder, so that the contents of the perhaps
existing spm_orthviews folder gets updated.
Volkmar
On Thu, 19 Oct 2006, Anna Sarnelli wrote:
> Hi,
> I tried to install the plugin spm_orthviews-SPM2 but I have some problems.
> I download the file spm_orthviews-SPM2.gz file from the SPM web site; which is
> the correct extension of the extracted file? is it a .m file? I tried to save
> it file as a .m file but at the first line there is some problems that I can't
> understand.
>
> I have already a directory called spm_orthviews where there are some files, do
> I have to add this file in this directory or in the general spm2 directory?
>
> Thanks in advance for your suggestions
> Cheers
> anna
> ----- Original Message ----- From: "Volkmar Glauche"
> <[log in to unmask]>
> To: <[log in to unmask]>
> Sent: Thursday, October 19, 2006 11:34 AM
> Subject: Re: [SPM] manual alignment
>
>
> Hi,
> this plugin should appear automatically in SPM5 once you have the latest
> patches installed. If you are still using SPM2, then go to the SPM
> extensions web page and look for spm_orthviews plugins.
> Volkmar
>
> On Wed, 18 Oct 2006, Ged Ridgway wrote:
>
> > Hi,
> >
> > Sorry, it's a plugin (spm5/spm_orthviews/spm_ov_reorient.m). I can't
> > honestly
> > remember what I did (if anything) to set this up, but I do have:
> > spm5/spm_orthviews/
> > in my Matlab path, so try adding it to yours (e.g. with pathtool) before
> > you
> > start Matlab, hopefully then the option should appear...
> >
> > Best,
> > Ged.
> >
> >
> >
> > Hedok Lee wrote:
> > > Hojat,
> > >
> > > I think there is "reorient images" option between quiver 3d and ROI
> > > tool.
> > > I'm attaching a screen shot of windows version SPM5.
> > >
> > > hope this helps.
> > >
> > > Hedok
> > >
> > >
> > > Hojat Vaheb wrote:
> > > > Thanks Ged.I used Check registration but it does not have
> > > > reorient
> > > > option; when I right click on the images the following list
> > > > appears:
> > > > -> zoom
> > > > -> crosshairs
> > > > -> orientation->voxel space | world space
> > > > -> interpolation
> > > > -> image
> > > > -> blobs
> > > > -> quiver
> > > > -> quiver 3d
> > > > -> roi tool
> > > >
> > > >
> > > > */Ged Ridgway <[log in to unmask]>/* wrote:
> > > >
> > > > Hojat Vaheb wrote:
> > > > > Hi experts.
> > > > > I want to know how I can use display function for manually
> > > > aligning the
> > > > > images before SPM performs it automatically.
> > > >
> > > > Hi Hojat,
> > > >
> > > > I'd use check registration, then select the image you wish to
> > > > reorient
> > > > to (e.g. spm5/templates/T1.nii) and the image you wish to
> > > > reorient.
> > > > Then right-click this image, and select
> > > > "reorient image(s)->current image"
> > > > change the parameters so as to align the red overlay with the
> > > > target,
> > > > and then click apply to image(s) and re-select the image (and
> > > > any
> > > > that
> > > > you want kept in register with it -- e.g. masks, etc.).
> > > >
> > > > Best,
> > > > Ged.
> > > >
> > > >
> > > > ------------------------------------------------------------------------
> > > > Talk is cheap. Use Yahoo! Messenger to make PC-to-Phone calls.
> > > > Great
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> > > > <http://us.rd.yahoo.com/mail_us/taglines/postman7/*http://us.rd.yahoo.com/evt=39666/*http://messenger.yahoo.com>
> > > >
> > >
> > >
> > > ------------------------------------------------------------------------
> > >
> >
> >
> >
>
>
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg http://fbi.uniklinik-freiburg.de/
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