Hi,
I tried to install the plugin spm_orthviews-SPM2 but I have some problems.
I download the file spm_orthviews-SPM2.gz file from the SPM web site; which
is the correct extension of the extracted file? is it a .m file? I tried to
save it file as a .m file but at the first line there is some problems that
I can't understand.
I have already a directory called spm_orthviews where there are some files,
do I have to add this file in this directory or in the general spm2
directory?
Thanks in advance for your suggestions
Cheers
anna
----- Original Message -----
From: "Volkmar Glauche" <[log in to unmask]>
To: <[log in to unmask]>
Sent: Thursday, October 19, 2006 11:34 AM
Subject: Re: [SPM] manual alignment
Hi,
this plugin should appear automatically in SPM5 once you have the latest
patches installed. If you are still using SPM2, then go to the SPM
extensions web page and look for spm_orthviews plugins.
Volkmar
On Wed, 18 Oct 2006, Ged Ridgway wrote:
> Hi,
>
> Sorry, it's a plugin (spm5/spm_orthviews/spm_ov_reorient.m). I can't
> honestly
> remember what I did (if anything) to set this up, but I do have:
> spm5/spm_orthviews/
> in my Matlab path, so try adding it to yours (e.g. with pathtool) before
> you
> start Matlab, hopefully then the option should appear...
>
> Best,
> Ged.
>
>
>
> Hedok Lee wrote:
> > Hojat,
> >
> > I think there is "reorient images" option between quiver 3d and ROI
> > tool.
> > I'm attaching a screen shot of windows version SPM5.
> >
> > hope this helps.
> >
> > Hedok
> >
> >
> > Hojat Vaheb wrote:
> > > Thanks Ged.I used Check registration but it does not have reorient
> > > option; when I right click on the images the following list appears:
> > > -> zoom
> > > -> crosshairs
> > > -> orientation->voxel space | world space
> > > -> interpolation
> > > -> image
> > > -> blobs
> > > -> quiver
> > > -> quiver 3d
> > > -> roi tool
> > >
> > >
> > > */Ged Ridgway <[log in to unmask]>/* wrote:
> > >
> > > Hojat Vaheb wrote:
> > > > Hi experts.
> > > > I want to know how I can use display function for manually
> > > aligning the
> > > > images before SPM performs it automatically.
> > >
> > > Hi Hojat,
> > >
> > > I'd use check registration, then select the image you wish to
> > > reorient
> > > to (e.g. spm5/templates/T1.nii) and the image you wish to
> > > reorient.
> > > Then right-click this image, and select
> > > "reorient image(s)->current image"
> > > change the parameters so as to align the red overlay with the
> > > target,
> > > and then click apply to image(s) and re-select the image (and any
> > > that
> > > you want kept in register with it -- e.g. masks, etc.).
> > >
> > > Best,
> > > Ged.
> > >
> > >
> > > ------------------------------------------------------------------------
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> > >
> >
> >
> > ------------------------------------------------------------------------
> >
>
>
>
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg http://fbi.uniklinik-freiburg.de/
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