Dear Roman,
>When SPM5 coregisters 2 intermodality scans (complete slice set for
>structural MRI and part of the head for CT ~10 cm thikness) it comes out
>with something which is completely wrong. The reason is obviously because >of
>the bad initial settings/orientations of CT scan before coregistration
>because it works perfect in some other cases.
>Could you please let me know how to specify those initial settings to do
>good start for coregistration?
Use the 'display' function to display the CT image. Reorient its origin so
that it roughly matches that of the MRI using the transformation boxes you
will find in the lower left-hand corner. When you are done shifting it
around, press the 'Reorient image' button.
Hope this helps,
Helmut
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