Thank you very much for your reply.
I checked the paths of spm and the two files were exactly unpacked to
the same folder as spm.m. However, after unpack, there are only two new
files: tbxDiffusion-SPM2 and diffhelp-SPM2 generated in the spm folder.
No folder called 'Diffusion' appeared in the spm/toolbox folder.
I am wondering whether the installation is simply extracting the two
files to the spm folder, or there are any other steps.
I didn't have a 'spm_get_userdata.m', but I found it from somewhere else
and copied it into spm folder. The problem still remains.
Could you please let me what the possible reason it would be?
Many thanks
shan
-----Original Message-----
From: SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]]
On Behalf Of Volkmar Glauche
Sent: 19 January 2006 13:29
To: [log in to unmask]
Subject: Re: [SPM] diffusion tensor toolbox
On Thu, 19 Jan 2006, Shan.Shen wrote:
> I've tried to install the diffusion tensor toolbox developed by
Volkmar
> Glauche. I downloaded the two compressed files: tbxDiffusion-SPM2.tar
> and diffhelp-SPM2.tar and unpacked them to spm2 folders (spm2/toolbox
or
> spm2). I was told the toolbox should become available from the toolbox
> menu on the next start of SPM2. However, there is nothing appeared on
> the toolbox menu. Does anybody know what the problem is? I got the
same
> problem when I installed Marsbar, however it can start from the
command
> line. I am wondering whether the diffusion tensor toolbox may be able
to
> start from the command line as well and how.
First of all, you should check your paths in Matlab:
1) find out, which spm function is called by typing
which spm
in the Matlab command window. This will give you the location of your
spm.m file, which is assumed to be the directory where all your SPM2
code
files live.
2) Check the installation of your toolboxes
In the folder where your spm.m lives, there should be a folder called
"toolbox", which in turn should contain a folder "Diffusion" if the
diffusion toolbox is installed correctly. In addition, the Matlab
function spm_get_userdata.m should be in the SPM folder.
You might be able to start the toolbox from the command line with
spm_tbx_Diffusion
but if your paths are not set correctly things may go wrong.
>
>
>
> It will be very much appreciated if there is any suggestion about
other
> diffusion tensor tools.
>
>
>
> Many thanks!
>
>
>
>
>
> shan shen
>
>
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg
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