> How can I run eddy_correct from FSL in a MATALB script.
Maybe something like this?
inp = 'input_file';
outp = 'output_file';
refno = num2str(ref_number);
fsldir = getenv('FSLDIR');
system([ fsldir '/bin/eddy_correct ' inp ' ' outp ' ' refno]);
Best regards,
-John
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