On Wed, 11 Jan 2006, Christoph Christmann wrote:
> At Thursday 08.12.2005 18:03, Volkmar Glauche wrote:
> > On Thu, 8 Dec 2005, Laurent Hermoye wrote:
> >
> > > In SPM5, I'm trying to define sequential SPM jobs (realign -
> > > coregister - normalize - ...), save them, and apply (load) it for
> > > each
> > > of my subjects. Is there a way to specify the image files only once
> > > for
> > > each patient or should I fill all the "Images <- X" forms for each
> > > patient ?
> >
> > Yes, fill them all in.
> >
> > > If the latter is true, how can we specify files before the job is
> > > run,
> > > whereas they will only be created during the job (e.g.
> > > rimg_122.img
> > > files that will only exist after the "realign" step)?
> >
> > Once you have finished filling in one step, "virtual files" will be shown
> > in spm_select for the following step. This way you can specify the entire
> > batch before running it.
>
> This seems not to work if you try to specify a first order model. If you
> append an _estimate_ job there are no virtual SPM.mat files in the specified
> directory (at least in my SPM5 package). However, you can use the ED feature
> to specify a 'virtual' SPM.mat
It depends how you specify the directory in spm_select:
If you change to the directory where you want to put the SPM.mat and then
select the "." entry, the virtual file will NOT show up. Instead, you
should change to the parent directory of your analysis directory and
select the name of the analysis directory in the right panel there.
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg
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