At Thursday 08.12.2005 18:03, Volkmar Glauche wrote:
>On Thu, 8 Dec 2005, Laurent Hermoye wrote:
>
> > In SPM5, I'm trying to define sequential SPM jobs (realign -
> > coregister - normalize - ...), save them, and apply (load) it for each
> > of my subjects. Is there a way to specify the image files only once for
> > each patient or should I fill all the "Images <- X" forms for each
> > patient ?
>
>Yes, fill them all in.
>
> > If the latter is true, how can we specify files before the job is run,
> > whereas they will only be created during the job (e.g. rimg_122.img
> > files that will only exist after the "realign" step)?
>
>Once you have finished filling in one step, "virtual files" will be shown
>in spm_select for the following step. This way you can specify the entire
>batch before running it.
This seems not to work if you try to specify a first order model. If
you append an _estimate_ job there are no virtual SPM.mat files in
the specified directory (at least in my SPM5 package). However, you
can use the ED feature to specify a 'virtual' SPM.mat
--
Christoph Christmann [log in to unmask]
Psychologist, MEE Fon/Fax +49 621 1703 63 18/05
Central Institute of Mental Health http://www.zi-mannheim.de
Department of Neuropsychology D-68159 Mannheim J5
and Clinical Psychology
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