Dear SPM community,
So far, I've seen several attempts (and some code snippets) to script
the SPM5 batch-analysis.
(e.g. Simon Eickhoff, Volkmar Glauche)
The first step in this process is to figure out the various parts of
the analysis batch job file.
for example:
jobs{1}.spatial{1}.realign{1}.estwrite.data{i}{j} - load data for
realignment
jobs{1}.spatial{2}.coreg{1}.estwrite.ref - load reference for
coregistration
...
jobs{1}.spatial{3}.preproc.data{1} - load data for segmentation
jobs{1}.spatial{5}.smooth.data{i} - load data for smoothing
etc.
Does anyone of you have an (extensive) overview of the most used
parameters
in both the preprocessing and statistical analysis of the data. (In
my case multiple linear regression).
In other words, is there a map of all parameters in the 'jobs' files.
The purpose is to automate most of the analysis steps based on
2 or 3 (predefined) jobs (e.g. 1. preprocessing, 2. specify model/
estimate model) for many subjects (without
much user intervention, e.g. mouse-clicking)
Thanks a lot in advance,
Greetings,
Cris
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Ir C.P. Lanting
University Medical Center Groningen
BCN Neuroimaging Center
Antonius Deusinglaan 2, room 125
P.O.Box 196
9700 AD Groningen
The Netherlands
phone: +31 (0)50 3637157
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