I'm a beginer in fsl.
Error message was shown during tbss_3_postreg with sample data
Same message was found if i type './areg' in DR directory.
Thank you for advance
bs Jeong
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[root@localhost tbss]# tbss_3_postreg
finding best target
CON_CE_FAi 11.6794176666 7.3507541666
CON_HJ_FAi 12.5080315000 8.6187358333
CON_ZC_FAi 12.7015718333 8.5917515000
PAT_AB_FAi 14.4689163333 10.2514833333
PAT_BS_FAi 12.1199936666 8.7357570000
PAT_CS_FAi 12.4555933333 9.0304803333
best target is CON_CE_FAi - now registering this to standard space
affine-registering target to MNI152 space
/usr/local/fsl/bin/DR/areg: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
/usr/local/fsl/bin/DR/transformation: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
transforming (and upsampling) all FA images into MNI152 space
CON_CE_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
CON_HJ_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
CON_ZC_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
PAT_AB_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
PAT_BS_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
PAT_CS_FAi
/usr/local/fsl/bin/DR/transformation2: error while loading shared libraries:
libstdc++.so.5: cannot open shared object file: No such file or directory
merging all upsampled FA images into single 4D image
Usage: avwmerge <-x/y/z/t> <output> <file1 file2 .......>
-t : concatenate images in time
-x : concatenate images in the x direction
-y : concatenate images in the y direction
-z : concatenate images in the z direction
-a : auto-choose: single slices -> volume, volumes -> 4D (time series)
** ERROR: nifti_image_read(all_FA): can't open header file
** ERROR: nifti_image_open(all_FA): bad header info
Error: failed to open file all_FA
Error:: FslCloneHeader: Null pointer passed for FSLIO
creating mean FA
** ERROR: nifti_image_read(all_FA): can't open header file
** ERROR: nifti_image_open(all_FA): bad header info
Error: failed to open file all_FA
Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
skeletonising mean FA
** ERROR: nifti_image_read(mean_FA): can't open header file
** ERROR: nifti_image_open(mean_FA): bad header info
Error: failed to open file mean_FA
ERROR: Could not open image mean_FA
Image Exception : #22 :: Failed to read volume mean_FA
terminate called after throwing an instance of 'RBD_COMMON::Exception'
/usr/local/fsl/bin/tbss_3_postreg: line 90: 23123 Aborted
${FSLDIR}/bin/tbss_skeleton -i mean_FA -o mean_FA_skeleton
now view mean_FA_skeleton to check whether the default threshold of 2000
needs changing, when running:
tbss_4_prestats [threshold]
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