Hi Doug - yes, you'll need an evtitle for each EV. You _might_ also
need:
set fmri(ortho1.1) 0
where "1" and "1" should be filled up for every combination of EVs
and
set fmri(alternative_example_func) ""
set fmri(cleanup_residuals_yn) 1
set fmri(init_initial_highres) ""
set fmri(init_highres) ""
set fmri(init_standard) ""
cheers.
On 11 Aug 2006, at 18:56, Doug Greve wrote:
> Thanks Steve. I did discover both of those options. I went with the
> latter as I need it to be automatic.
>
> I'm adding the following to my 3.2 design.fsf:
>
> set fmri(critical_z) 5.3
> set fmri(noise) 0.66
> set fmri(noisear) 0.34
> set fmri(evtitle1) ""
>
> Will I need an evtitle for each EV? Any others you can think of.
>
> doug
>
>
> Steve Smith wrote:
>
>> Yo Doug,
>>
>> In general you can't feed an old design.fsf straight into a newer
>> command-line .feat but in general you _can_ load it into the Feat
>> GUI and re-save. This should fill out the new variables (though
>> you may in some cases need to open the design matrix sub-GUI and
>> close that first).
>>
>> Or you can try randomly adding the missing variables at the end
>> of your design.fsf - you can see the design.fsf in FEEDS as an
>> example.
>>
>> Cheers, Steve.
>>
>>
>> On 10 Aug 2006, at 21:27, Doug Greve wrote:
>>
>>> Is it possible to use a version 3.2b design.fsf in version 3.3?
>>> I just tried it and got the error:
>>>
>>> /usr/pubsw/packages/fsl/3.3.2/bin/feat_model design
>>> Can't find key fmri(critical_z)
>>>
>>> And then later FILM failed because it could not find design.mat
>>>
>>> thanks!
>>>
>>> doug
>>
>>
>>
>> ---------------------------------------------------------------------
>> --- ---
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------
>> --- ---
>>
>>
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> [log in to unmask]
> Phone Number: 617-724-2358 Fax: 617-726-7422
>
> In order to help us help you, please follow the steps in:
> surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
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