Hi Michael,
FSLView always views images in their 'native' slicing (although it
may flip the x-axis if it determined that the original image was
"neurologically-ordered").
So this is normal and expected behaviour, and this is why we
put the labels in. I'm glad they are correct! :)
Future versions of FSLView will hopefully allow the user to
display in different orientations, based on sform/qform info,
but at the moment it is only the labels which are determined
from these.
All the best,
Mark
On 15 Aug 2006, at 02:29, Michael Hanke wrote:
> Hi all,
>
> I converted a series of dicom images to nifti using dinifti. When I
> open the
> converted files in FSLView 2.4 I have the following layout in ortho
> view:
>
> S S
>
> L COR R A SAG P
>
> I S
>
>
> P
>
> L TRA R
>
> A
>
> This is true for all files (lowres structural and functional), but for
> the
> highres structural scan. The layout for this 3d volume is this:
>
> L L
>
> A TRA P S COR I
>
> R R
>
>
> I
>
> A SAG P
>
> S
>
> Please note, that the iorientation labels are correct, but the slices
> are
> displayed in a weird way (sagital slice is upside-down, the others
> rotated by
> 90 deg).
>
> What could be the reason for this behaviour. Is it a limitation of
> FSLView or a
> conversion error?
>
> The converted structural scan can be found here:
>
> http://apsy.gse.uni-magdeburg.de/~hanke/dicom2nifti/strange.nii.gz
>
> and the lowres scan for comparison:
>
> http://apsy.gse.uni-magdeburg.de/~hanke/dicom2nifti/lowres.nii.gz
>
>
> Thanks in advance.
>
>
> Bye,
>
> Michael
>
>
>
> --
> GPG key: 1024D/3144BE0F Michael Hanke
> http://apsy.gse.uni-magdeburg.de/hanke
> ICQ: 48230050
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