On Thu, 5 May 2005 15:05:11 +0100
owen maroney <[log in to unmask]> wrote:
Hello Owen
I've seen that at Durham, I spoke to Steve Traylen about this, I think
he said it was a race condition between Globus and PBS, but I could be
wrong, it would be best to check with him.
Mark.
> Hi all,
>
> We have occassionally been getting a these message from grid jobs that
> were cancelled not long after starting running in PBS.
>
> The output (either stderr or stdout or both) left in
> /var/spool/pbs/undelivered is invariably a 0-sized file.
>
> Has anyone encountered this feature in PBS before: when the jobs
> produce either no, or a zero sized stdout or stderr file, PBS fails to
> copy it back to the server?
>
> cheers,
> Owen.
> ps. Yes, we have checked password free ssh is working between the
> nodes and the server!
>
> -------- Original Message --------
>
> PBS Job Id: 1180.gw39.hep.ph.ic.ac.uk
> Job Name: STDIN
> File stage in failed, see below.
> Job will be retried later, please investigate and correct problem.
> Post job file processing error; job 1180.gw39.hep.ph.ic.ac.uk on host
> gw33.hep.ph.ic.ac.uk/0
>
> Unable to copy file 1180.gw39.h.OU to
> gw39.hep.ph.ic.ac.uk:/home/dteam011/.lcgjm/globus-cache-export.6d24ZW
> /batch.out
> >>> error from copy
> gw39.hep.ph.ic.ac.uk: Connection refused
> xport.6d24ZW/batch.out: No such file or directory
> >>> end error output
> Output retained on that host in:
> /var/spool/pbs/undelivered/1180.gw39.h.OU
>
> Unable to copy file 1180.gw39.h.ER to
> gw39.hep.ph.ic.ac.uk:/home/dteam011/.lcgjm/globus-cache-export.6d24ZW
> /batch.err
> >>> error from copy
> gw39.hep.ph.ic.ac.uk: Connection refused
> xport.6d24ZW/batch.err: No such file or directory
> >>> end error output
> Output retained on that host in:
> /var/spool/pbs/undelivered/1180.gw39.h.ER
>
>
> --
> =======================================================
> Dr O J E Maroney # London Tier 2 Technical Co-ordinator
>
> Tel. (+44)20 759 47802
>
> Imperial College London
> High Energy Physics Department
> The Blackett Laboratory
> Prince Consort Road, London, SW7 2BW
> ====================================
>
-------------------------------------------------------------
Mark Nelson - [log in to unmask]
IPPP, Department of Physics, University of Durham,
Science Laborartories, South Road, Durham, DH1 3LE
Office: +44 (0)191 334 3811, Direct Dial: +44 (0)191 334 3653
This mail is for the addressee only
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