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Subject:
Re: Normalisation of mouse brains
From:
John Ashburner <[log in to unmask]>
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Date:
Tue, 19 Jul 2005 14:34:21 +0000
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text/plain
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text/plain (26 lines)
> One more question! Im a bit confused how to normalise a set of mouse brain > pictures using spm2. All the templates seem to be for human brains. > > I have about 4 mice for a study, each mouse has 66time points and 10slices > per timepoint. I would like to combine all the data and then put it > through spm. > > Is this done by realigning the data for each mouse sepouratly first and > then using normalisation to combine the data sets? You would do within subject registration to realign, but pooling your results would need spatial normalisation by matching to a template image. See the following links for some suggestions (note that some of them contain "dead" links): http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind01&L=SPM&P=R323255&I=-3&X=3955DB74B8FB1CA9F8&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind04&L=SPM&P=R350007&I=-3&X=646FB73C8D982008F1&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind03&L=SPM&P=R166155&I=-3&X=3817AB0346B7637806&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind03&L=SPM&P=R153250&I=-3&X=3817AB0346B7637806&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind02&L=SPM&P=R96333&I=-3&X=401D290F7DF34680BA&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind03&L=SPM&P=R165930&I=-3&X=381B4A6C95A43E42D8&Y=spm%40fil.ion.ucl.ac.uk http://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind03&L=SPM&P=R161345&I=-3&X=381B4A6C95A43E42D8&Y=spm%40fil.ion.ucl.ac.uk Best regards, -John
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