When I acquire images of a subject whose head is slightly tilted, I
tilt the image stack to compensate, so the subject's head is lined up
with the image stack (Scanning on a Siemens 3T Trio).
If I convert the dicom images using SPM2's Dicom toolbox, the tilt of
the image stack is faithfully preserved. I would rather have a straight
image stack, which would compensate for the subject's tilted head.
Has anyone modified spm_dicom_convert to do this? I tried a simple hack
(replacing hdr{i}.ImageOrientationPatient with [1 0 0 0 1 0] ) which
created new problems. I realize that I could use "Reorient images" on
the display page, but prefer a more efficient solution.
Many Thanks in Advance
Jim Lee
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