This can happen when the functional images does only have partial
coverage. Have you tried to write the normalised structural only?
best
Torben
Torben E. Lund
Danish Research Centre for MR
Copenhagen University Hospital
Kettegaard Allé 30
2650 Hvidovre
Denmark
email: [log in to unmask]
webpage: http://www.drcmr.dk
On 1 Feb 2005, at 11:14, Christian Keysers wrote:
> Dear SPMers
>
> I have followed John Ashburner's proceedure for aligning data from
> different days, and it works very nicely
> After determining the normalisation based on the segmented T1 and the
> apriory for grey matter, we applied this normalisation using the
> template bounding box to our mean functional and T1, and found the top
> of the parietal lobe and the bottom of the cerebellum to be chopped
> off...
>
> I checked the segmentation, and it contains everything. I visualised
> the
> normalised T1 many ways. The top and bottom are always missing...
>
> What are we doing wrong?
>
>
> --
> Christian Keysers, PhD
> Assistant Professor
>
> BCN Neuro-Imaging Center
> University of Groningen
> Antonius Deusinglaan 2 (room 120)
> 9713 AW Groningen
>
> Phone: +31 50 3638794
> Fax: +31 50 3638875
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