Dear Renat,
you might also consider the option to acquire one image covering the whole
head with the your functional sequence using the same parameters/slice
orientation as for fMRI just before your fMRI experiment starts. You can
use this image to determine normalisation parameters and normalise your
fMRI data.
On Wed, 5 Oct 2005, Renat Yakupov wrote:
> So we acquire fMRI images which don't cover the whole brain and I was
> wondering
> what should I do about normalization for subsequent inter-subject analysis.
>
> We also acquire a T1-weighted structural scan during the same session, so
> I normalized that to a T1 template and then I used "*_sn.mat" file to
> normalize
> fMRI data using "Write normalized only" option under "Normalize".
--
Volkmar Glauche
-
Department of Neurology [log in to unmask]
Universitaetsklinikum Freiburg Phone 49(0)761-270-5331
Breisacher Str. 64 Fax 49(0)761-270-5416
79106 Freiburg
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