Dear SPMers,
I changed the lesionmask.m file so that it looks for T1.nii. I still get an
error message when running the lesion mask on my CT data sets. I also try with
the Transm.nii but it also generate an error message. Any suggestion about the
error source?
Here is the error message:
??? One or more output arguments not assigned during call to 'spm_vol
(subfunc)'.
Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m (subfunc1)
On line 83 ==> v = subfunc(P(i,:));
Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m (subfunc2)
On line 71 ==> V = subfunc1(P);
Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m
On line 57 ==> V = subfunc2(P);
Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_normalise.m
On line 139 ==> if ischar(VWG), VWG=spm_vol(VWG); end;
Error in ==> C:\MATLAB6p5\spm5b\spm5b\lesionmask.m
On line 23 ==> prm = spm_normalise(VG0,VF,'',dnrm.estimate.weight,wtsrcName
,dnrm.estimate);
>> line 23 ==> prm = spm_normalise(VG0,VF,'',dnrm.estimate.weight,wtsrcName
,dnrm.estimate);
??? Error using ==> line
Not enough input arguments.
Thanks in advance,
Mireille Paradis
Research Assistant, Neuropsychology
(418)-529-9141 # 6071
Center for Interdisciplinary Research in Readaptation and Social Integration,
Quebec, Canada
Selon John Ashburner <[log in to unmask]>, 10.06.2005:
> Try changing your lesionmask.m file so that it looks for T1.nii instead of
> T1.mnc. There is no T1.mnc in SPM5b.
>
> Best regards,
> -John
>
> On Friday 10 June 2005 15:46, you wrote:
> > Dear SPMers
> >
> > I faced the following error message attempting to normalize images that
> > have a lesion (I previously created a lesion mask in MRIcro):
> >
> >
> > ERROR :
> >
> > ---------------------------------------
> > ??? One or more output arguments not assigned during call to 'spm_vol
> > (subfunc)'.
> >
> > Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m (subfunc1)
> > On line 83 ==> v = subfunc(P(i,:));
> >
> > Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m (subfunc2)
> > On line 71 ==> V = subfunc1(P);
> >
> > Error in ==> C:\MATLAB6p5\spm5b\spm5b\spm_vol.m
> > On line 57 ==> V = subfunc2(P);
> >
> > Error in ==> C:\MATLAB6p5\spm5b\spm5b\lesionmask.m
> > On line 12 ==> VG0 = spm_vol(fullfile(spm('Dir'),'templates','T1.mnc'));
> >
> > ----------------------------------------
> >
> > I followed the MRIcro tutorial steps to normalize CT scans with MRIcro and
> > SPM2. Unfortunatly, those are clinical scans and the original fine slices
> > are missing (according to the technician these slices are essential for 3D
> > rendering). Is it still possible to normalize our data sets in MNI space?
> >
> > Any suggestion to remove skull or normalize CT scans?
> >
> > (I have downloaded Updates_186.tar.gz)
> >
> > Sincerely,
> >
> > Mireille Paradis
> > Research Assistant, Neuropsychology
> > (418)-529-9141 # 6071
> > Center for Interdisciplinary Research in Readaptation and Social
> > Integration, Quebec, Canada
>
>
>
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