Dear Marieke,
> I would like to normalize my FLAIR data, but cannot find a FLAIR-template.
> Does anyone have a FLAIR-template? Or is there another way of normalizing
> this data, e.g. by using a T1-template?
I've create once a Flair template (which, unfortunately, I can not make available at the moment), by coregistering the Flair images with the T1 image of the same subject (do not necessarily need to be a 3D, an axial T1 images should work as well, I guess). Finally, you can normalize the T1 and apply the normalization parameter to the Flair image.
If you have only the Flair images, you can probably use the T2 template and use only an affine transformation. You should than average all the normalized Flair images, in order to create a new template, which you use as the templatee for the second round of normalization, by normalizing the original Flair images onto the new template.
Good luck,
Karsten
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Karsten Specht, PhD
Department of Biological and Medical Psychology
& National Competence Centre for functional MRI
University of Bergen
Jonas Lies vei 91
5009 Bergen
Norway
Tel.: +47-555-86279
Fax: +47-555-89872
[log in to unmask]
http://fmri.uib.no/
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