Dear list,
I’m a little confused, about how to get an roi in the normalized space
corresponding to the original image normalized.
After normalizing my original.img to the T1 template space, I want to apply
the same transformation to a corresponding roi.img to get the roi in the
normalized space.
Should I use the deformation tool box as follows:
1)Get the Deformation from sn.mat
2)Apply the y.img deformation to the roi.img
Or am I supposed to Invert the y *.img deformation and apply the iy *.img
deformation
Also, is this all there is to applying both the linear and non-linear
transformation components, or should I keep in mind anything else (e.g
initial orientation, dimensions differences between the original image and
template)
your advice will be appreciated a lot,
Many thanks,
Ayelet
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